def prepare_bcbio_samples(sample):
"""
Function that will use specific function to merge input files
"""
if sample['fn'] == "fq_merge":
out_file = fq_merge(sample['files'], sample['out_file'], sample['config'])
elif sample['fn'] == "bam_merge":
out_file = bam_merge(sample['files'], sample['out_file'], sample['config'])
sample['out_file'] = out_file
return [sample]
def prepare_bcbio_samples(sample):
"""
Function that will use specific function to merge input files
"""
if sample['fn'] == "fq_merge":
out_file = fq_merge(sample['files'], sample['out_file'], sample['config'])
elif sample['fn'] == "bam_merge":
out_file = bam_merge(sample['files'], sample['out_file'], sample['config'])
sample['out_file'] = out_file
return [sample]
def prepare_bcbio_samples(sample):
"""
Function that will use specific function to merge input files
"""
logger.info("Preparing %s files %s to merge into %s." % (sample['name'], sample['files'], sample['out_file']))
if sample['fn'] == "fq_merge":
out_file = fq_merge(sample['files'], sample['out_file'], sample['config'])
elif sample['fn'] == "bam_merge":
out_file = bam_merge(sample['files'], sample['out_file'], sample['config'])
sample['out_file'] = out_file
return [sample]