def test_cmsearch_from_alignment_no_hits(self):
"""cmsearch_from_alignment should work as expected
"""
search_res = cmsearch_from_alignment(aln=self.seqs2_aligned,\
structure_string=self.struct2_aligned_string,\
seqs=self.seqs1_unaligned,moltype=RNA)
self.assertEqual(search_res,[])
def test_cmsearch_from_alignment(self):
"""cmsearch_from_alignment should work as expected
"""
exp_search_res = [['a', 5, 23, 1, 19, 12.85, '-', 37],\
['b', 1, 19, 1, 19, 14.359999999999999, '-', 47]]
search_res = cmsearch_from_alignment(aln=self.seqs2_aligned,\
structure_string=self.struct2_aligned_string,\
seqs=self.seqs2_unaligned,moltype=RNA)
for search, exp in zip(search_res, exp_search_res):
self.assertEqual(search[1:],exp)
