def next111(strBound, precVar):
if precVar == (23, 8):
origValue = single(eval(strBound))
strOrigValue = strFormatFromDecimalLib(origValue)
if strOrigValue != strBound: #bound is not exactly representable in double or single precision
n, d = bigfloat.next_up(
eval(strOrigValue),
context=bigfloat.precision(24)).as_integer_ratio()
newValue = single(n / float(d))
if newValue > origValue:
return strFormatFromDecimalLib(newValue)
else:
exit("Problem in conversion of bound:" + strBound)
else:
return strOrigValue
elif precVar == (52, 11):
origValue = Decimal(eval(strBound))
strOrigValue = strFormatFromDecimalLib(origValue)
if strOrigValue != strBound: #bound is not exactly representable in double or single precision
n, d = bigfloat.next_up(
eval(strOrigValue),
context=bigfloat.precision(53)).as_integer_ratio()
newValue = eval("Decimal(" + str(n) + "/" + str(d) + ".0)")
if newValue > origValue:
return strFormatFromDecimalLib(newValue)
else:
exit("Problem in conversion of bound:" + strBound)
else:
return strOrigValue
else:
exit("Precision not recognized")
def getInfo(data, target, theta):
afterSigmoid = sigmoid(data.dot(theta))
firstList = [ ]
for k in afterSigmoid:
m = []
for x in k:
m.append(bigfloat.log(x,bigfloat.precision(precision)))
firstList.append(m)
secondList = [ ]
for k in afterSigmoid:
m = []
for x in k:
m.append(bigfloat.log( bigfloat.sub(1. , x) , bigfloat.precision(precision)))
secondList.append(m)
Ein = 0.
m = []
for x,y in zip(firstList, secondList):
for a,b,t in zip(x,y,target):
value = bigfloat.add( bigfloat.mul(t[0],a, bigfloat.precision(precision)) , bigfloat.mul( bigfloat.sub(1. ,t[0], bigfloat.precision(precision)) ,a, bigfloat.precision(precision)))
m.append(value)
for item in m:
Ein = bigfloat.add(item, Ein, bigfloat.precision(precision))
Ein = - Ein
print(Ein)
gradient = -data.T.dot(target-afterSigmoid)
return (Ein, gradient)
def Evaluate(pk,cl,ck,s={}):
#S is for debugging
(pk0,x,y)=pk
cl0=[]
for (i,j) in cl:
cl0.append(i)
c0 = SomeWhatEvaluate((pk0,x), cl0, ck)
z=[None]*(Params.bigo+1)
for i in range(1,Params.bigo+1):
k=bigfloat.mul(c0,y[i],bigfloat.precision((Params.kappa+Params.gamma)))
z[i]=float(bigfloat.mod(k,2,bigfloat.precision((Params.prec))))
if debug:
su=0
yo=0
for i in range(1,Params.bigo+1):
if s[i]==1:
yo=bigfloat.add(yo,y[i],bigfloat.precision((Params.kappa+Params.gamma)))
su=bigfloat.add(su,z[i],bigfloat.precision(Params.kappa+Params.gamma))
print "Enc_sum%2=",bigfloat.mod(su,8,bigfloat.precision((Params.prec+Params.gamma)))
q=bigfloat.div(c0,globsk,bigfloat.precision(Params.kappa+Params.gamma))
print "(c0/sk)=",q
q=bigfloat.mul(c0,yo,bigfloat.precision((Params.kappa+Params.gamma)))
print "(c0*yo)=",q
q=bigfloat.div(1,globsk,bigfloat.precision(Params.kappa+Params.gamma))
print "(1/sk)=",q
print "(yo)=",yo
print "(c0*1/sk)=",bigfloat.mul(q,c0,bigfloat.precision((Params.prec+Params.gamma)))
q=bigfloat.div(c0,globsk,bigfloat.precision((Params.prec+Params.gamma)))
print "(c0/sk)=",q
c = (c0,z)
return c
def GenLn2(self):
with precision(128):
ln2 = bigfloat.log(2.0)
l = bin64(ln2).hex1int() & 0xffffffffe0000000
ld = bin64(hex_to_double(l))
print(".ln_lead = ", double_to_hex(ld), ld.hex())
with precision(128):
t = ln2 - ld
tail = bin64(t)
print(".ln_tail = ", double_to_hex(tail), tail.hex())
def appendZVector(self, c0):
y = self.yvector
z=[None]*(Params.bigo+1)
for i in range(1,Params.bigo+1):
k=bigfloat.mul(c0,y[i],bigfloat.precision(Params.gamma+Params.kappa))
z[i]=float(bigfloat.mod(k,2,bigfloat.precision(Params.prec)))
# Sometimes mod goes wrong
if z[i]>=2.0:
z[i]=0
c = (c0,z)
return c
def GenLn2(self):
with precision(128):
ln2 = bigfloat.log(2.0)
h = -ln2 / self.table_size
hint = bin64(h).hex1int() & 0xffffffffffff0000
hd = bin64(hex_to_double(hint))
print(".ln2by_tblsz_head = ", hd.hex())
with precision(128):
t = h - hd
tail = bin64(t)
print(".ln2by_tblsz_tail = ", tail.hex())
def interval_bf_operation(self,
precision_of_result: int,
ad: bool = False):
self.precision = precision_of_result
child = self.child
context_down = bf.precision(precision_of_result) + bf.RoundTowardNegative
context_up = bf.precision(precision_of_result) + bf.RoundTowardPositive
interval, deriv = self.unary_op([child.lower, child.upper], context_down, context_up)
self.lower, self.upper = interval
lower_deriv, upper_deriv = deriv
if ad:
child.ad_lower_children.append((lower_deriv, self))
child.ad_upper_children.append((upper_deriv, self))
def partition_functions_for_each_configuration(self):
"""
Inversely solve the free energy to get partition function for :math:`j` th configuration by
.. math::
Z_{j}(T, V) = \exp \\bigg( -\\frac{ F_{j}(T, V) }{ k_B T } \\bigg).
:return: A matrix, the partition function of each configuration of each volume.
"""
try:
import bigfloat
except ImportError:
raise ImportError(
"Install ``bigfloat`` package to use {0} object!".format(
self.__class__.__name__))
with bigfloat.precision(self.precision):
return np.array([
bigfloat.exp(d)
for d in # shape = (# of volumes for each configuration, 1)
logsumexp(
-self.aligned_free_energies_for_each_configuration.T /
(K * self.temperature),
axis=1,
b=self.degeneracies)
])
def sollya_gamma_fct(x, diff_order, prec):
""" wrapper to use bigfloat implementation of exponential
rather than sollya's implementation directly.
This wrapper implements sollya's function API.
:param x: numerical input value (may be an Interval)
:param diff_order: differential order
:param prec: numerical precision expected (min)
"""
fct = None
if diff_order == 0:
fct = sollya_gamma
elif diff_order == 1:
fct = sollya_gamma_d0
elif diff_order == 2:
fct = sollya_gamma_d1
else:
raise NotImplementedError
with bigfloat.precision(prec):
if x.is_range():
lo = sollya.inf(x)
hi = sollya.sup(x)
return sollya.Interval(fct(lo), fct(hi))
else:
return fct(x)
def FLOAT(self, t):
#t.value = float(t.value)
#t.value = np.float128(t.value)
t.value = bf.BigFloat(t.value, bf.precision(128))
#t.value = t.value
#print("value -> ", t.value)
return t
def get_noise(obj):
if float(obj.token.value).is_integer and float(
obj.token.value) == obj.token.value:
return 0
if bf.sub(bf.BigFloat(obj.token.value, bf.precision(113)),
bf.BigFloat(obj.token.value, bf.precision(50)),
bf.precision(1024)) == 0:
return 0
v = math.log(abs(obj.token.value), 2)
if (v - math.floor(v) != 0.0):
if (obj.token.value <= 0):
return -pow(2, math.floor(v))
else:
return pow(2, math.floor(v))
return 0.0 #obj.token.value
def run_benchmark(log_error_bound: int,
benchmark: Benchmark,
configuration_increment: Optional[Callable] = None,
use_ad: bool = False):
exact_program, variables = benchmark.benchmark(), benchmark.variables
init_prec = 50
context = bf.RoundTowardZero + bf.precision(100000)
assert log_error_bound < 0, "Log error bound should be negative!"
error_bound = bf.BigFloat(f'0.{"0"*(-log_error_bound-1)}1', context)
[var.sample() for var in variables]
if use_ad:
params = [
exact_program, error_bound,
[init_prec] * exact_program.subtree_size()
]
time, (num_refinements,
precision_configuration) = time_wrap(evaluate_using_derivatives,
params)
else:
params = [
exact_program, error_bound, configuration_increment, True,
init_prec
]
time, (num_refinements,
precision_configuration) = time_wrap(evaluate, params)
data = {
"time": time.total_seconds(),
"num_refinements": num_refinements,
"log_error_bound": float(log_error_bound),
"last_prec_config": precision_configuration,
}
return data
def _compute_grad(self, children: List) -> bf.BigFloat:
context = bf.precision(self.grad_precision) + bf.RoundAwayFromZero
grad = 0
for (w1, w2), var in children:
lower, upper = var.grad()
grad_term = bf.add(bf.mul(w1, lower, context), bf.mul(w2, upper, context), context)
grad = bf.add(grad_term, grad, context)
return grad
def reprocessKey(pk):
(pk0,x0,y0)=pk
y={}
for i in range(1,Params.bigo+1):
k = bigfloat.BigFloat(y0[i],bigfloat.precision(Params.kappa))
y[i] = k
pk=(pk0,x0,y)
return pk
def sigmoid(s):
y = []
for k in s:
z=[]
for l in k:
z.append( bigfloat.div( 1. , bigfloat.add(1,bigfloat.exp(-l,bigfloat.precision(precision)))))
y.append(z)
return np.array(y)
def sigmoidx(x, derivative):
# the function
s = 1 / (1 + bfloat.exp(-x / 20, bfloat.precision(30)))
# if derivative is true, the output is the derivative
if derivative == True:
return (s + s * (1 - s))
else:
return s
def interval_bf_operation(self,
precision_of_result: int,
ad: bool = False):
self.precision = precision_of_result
left, right = self.children
context_down = bf.precision(precision_of_result) + bf.RoundTowardNegative
context_up = bf.precision(precision_of_result) + bf.RoundTowardPositive
self.lower = bf.sub(left.lower, right.upper, context_down)
self.upper = bf.sub(left.upper, right.lower, context_up)
if ad:
left, right = self.children
left.ad_lower_children.append(((1, 0), self))
right.ad_lower_children.append(((0, -1), self))
left.ad_upper_children.append(((0, 1), self))
right.ad_upper_children.append(((-1, 0), self))
def multiply(left_lower: BigFloat,
left_upper: BigFloat,
right_lower: BigFloat,
right_upper: BigFloat,
precision_of_result: int):
context_down = bf.precision(precision_of_result) + bf.RoundTowardNegative
context_up = bf.precision(precision_of_result) + bf.RoundTowardPositive
# Note: inefficient to compute all pairs, Kaucher multiplication in future?
ll_down = bf.mul(left_lower, right_lower, context_down), (left_lower, 0), (right_lower, 0)
lu_down = bf.mul(left_lower, right_upper, context_down), (left_lower, 0), (right_upper, 1)
ul_down = bf.mul(left_upper, right_lower, context_down), (left_upper, 1), (right_lower, 0)
uu_down = bf.mul(left_upper, right_upper, context_down), (left_upper, 1), (right_upper, 1)
ll_up = bf.mul(left_lower, right_lower, context_up), (left_lower, 0), (right_lower, 0)
lu_up = bf.mul(left_lower, right_upper, context_up), (left_lower, 0), (right_upper, 1)
ul_up = bf.mul(left_upper, right_lower, context_up), (left_upper, 1), (right_lower, 0)
uu_up = bf.mul(left_upper, right_upper, context_up), (left_upper, 1), (right_upper, 1)
(lower_product, (ll, ll_ind), (lr, lr_ind)) = min([ll_down, lu_down, ul_down, uu_down], key=lambda x: x[0])
(upper_product, (ul, ul_ind), (ur, ur_ind)) = max([ll_up, lu_up, ul_up, uu_up], key=lambda x: x[0])
# Assign derivative weights based on partial derivatives in chain rule
llw, lrw, ulw, urw = [[0., 0.], [0., 0.], [0., 0.], [0., 0.]]
if ll_ind == 0:
llw[0] = float(lr)
else:
ulw[0] = float(lr)
if lr_ind == 0:
lrw[0] = float(ll)
else:
urw[0] = float(ll)
if ul_ind == 0:
llw[1] = float(ur)
else:
ulw[1] = float(ur)
if ur_ind == 0:
lrw[1] = float(ul)
else:
urw[1] = float(ul)
return lower_product, upper_product, llw, lrw, ulw, urw
def SomeWhatDecrypt(sk,c):
t = sk/2
if debug:
x = int(bigfloat.div(c,sk,bigfloat.precision(1000)))
y = c/sk
print "SomeWhatDecrypt:x:",x
print "SomeWhatDecrypt:y:",y
print "SomeWhatDecrypt:c%sk:",c%sk
print "SomeWhatDecrypt:c-x*sk:",c-x*sk
return (c-(c+t)/sk)%2
def logn2(n, p):
"""Best p-bit lower and upper bounds for log(2)/log(n), as Fractions."""
with precision(p):
extra = 10
while True:
with precision(p + extra):
# use extra precision for intermediate step
log2upper = log2(n, RoundTowardPositive)
log2lower = log2(n, RoundTowardNegative)
lower = div(1, log2upper, RoundTowardNegative)
upper = div(1, log2lower, RoundTowardPositive)
# if lower and upper are adjacent (or equal) we're done
if next_up(lower) == upper:
return (Fraction(*lower.as_integer_ratio()),
Fraction(*upper.as_integer_ratio()))
# otherwise, increase the precision and try again
extra += 10
def binary_to_range(self, point: str, precision) -> BigFloat:
""" Bring a point from [0, 1] to a given range. """
point = point[:precision + 2]
interval_width = self.var_upper - self.var_lower
bitwidth = len(point) - 2
full_prec_context = bf.precision(bitwidth) + bf.RoundTowardNegative
# Map to [0, 1]
value = bf.mul(int(point, 2), bf.exp2(-bitwidth, full_prec_context), full_prec_context)
rescaled = bf.add(bf.mul(value, interval_width, full_prec_context), self.var_lower, full_prec_context)
return rescaled
def GenTable(self):
#newsize = self.table_size + 1
newsize = self.table_size << 1
for j in range(0, newsize): # 0 to 256
with precision(256):
f = bigfloat.log(1 + j / newsize)
f_leadint = bin64(f).hex1int() & 0xfffffffff0000000
f_tail = f - hex_to_double(f_leadint)
#print("%x"%f_leadint, double_to_hex(float(f_tail)))
print("{", "0x%x, %s" % (f_leadint, double_to_hex(f_tail)), "},")
def logn2(n, p):
"""Best p-bit lower and upper bounds for log(2)/log(n), as Fractions."""
with precision(p):
extra = 10
while True:
with precision(p+extra):
# use extra precision for intermediate step
log2upper = log2(n, RoundTowardPositive)
log2lower = log2(n, RoundTowardNegative)
lower = div(1, log2upper, RoundTowardNegative)
upper = div(1, log2lower, RoundTowardPositive)
# if lower and upper are adjacent (or equal) we're done
if next_up(lower) == upper:
return (Fraction(*lower.as_integer_ratio()),
Fraction(*upper.as_integer_ratio()))
# otherwise, increase the precision and try again
extra += 10
def main():
start = time.perf_counter()
somme = 0
for i in range(1, 101):
rac = bigfloat.sqrt(i, bigfloat.precision(385))
if rac != int(rac):
s = partie_decimale(rac)[:100]
somme += sumdigits(int(s))
print(somme)
print('temps d execution', time.perf_counter() - start, 'sec')
def GenTable(self):
for i in range(0, self.table_size):
idx = float(i) / self.table_size
h1 = 0.0
with precision(200):
h1 = bigfloat.pow(2.0, idx)
fm, fh, fl = split_double(h1)
#print("{", fh.hex(), ", ", fl.hex(), "},\n", endl='')
print("{", double_to_hex(fm), ", ", double_to_hex(fh), ", ",
double_to_hex(fl), "},")
if i % 16 == 0:
print("// i = %d" % i)
def mk_bfc(self, x, y):
from bigfloat import BigFloat, precision
from mbrat.util import Arguments
with precision(self.prec):
bf_x = BigFloat.exact(x)
bf_y = BigFloat.exact(y)
return Arguments(
{'real': bf_x, 'imag': bf_y},
string="bfc(real='{0}', imag='{1}')".format(bf_x, bf_y) )
def Decrypt(sk,c,calcZ=True,sk1=1):
#sk1 is for debugging purpose
su=0
if calcZ:
(c0,z) = c
for i in range(1,Params.bigo+1):
if sk[i]!=0:
su=bigfloat.add(su,z[i],bigfloat.precision(Params.prec))
else:
c0 = c
if Keys.PK==None:
print "Error: Z vector must be provided when public key not available"
exit()
y = Keys.PK[2]
for i in range(1,Params.bigo+1):
if sk[i]!=0:
z = bigfloat.mul(c0,y[i],bigfloat.precision(Params.kappa))
z = float(bigfloat.mod(z,2,bigfloat.precision(Params.prec)))
su=bigfloat.add(su,z,bigfloat.precision(Params.prec))
su=int(bigfloat.round(su))
m = (c0-su) % 2
return m
def invert(lower: BigFloat, upper: BigFloat, precision_of_result: int) -> ExactRealProgram:
context_down = bf.precision(precision_of_result) + bf.RoundTowardNegative
context_up = bf.precision(precision_of_result) + bf.RoundTowardPositive
# interval doesn't contain zero then invert and flip [1 / y2, 1 / y1]
if (lower > 0 and upper > 0) or (lower < 0 and upper < 0):
inv_lower = bf.div(1, upper, context_down)
inv_upper = bf.div(1, lower, context_up)
lw = [0, -float(inv_upper)**2]
uw = [-float(inv_lower)**2, 0]
# [lower, 0] -> [-infty, 1 / y1]
elif lower < 0 and upper == 0:
inv_lower = BigFloat('-inf')
inv_upper = bf.div(1, lower, context_up)
lw = [0, float('nan')]
uw = [-float(inv_lower)**2, 0]
# [0, upper] -> [1 / y2, infty]
elif lower == 0 and upper > 0:
inv_lower = bf.div(1, upper, context_down)
inv_upper = BigFloat('inf')
lw = [0, -float(inv_upper)**2]
uw = [float('nan'), 0]
# If the interval includes 0 just give up and return [-infty, infty]
# Note: an alternative is to split up intervals, but that's too tricky for now
elif lower < 0 < upper:
inv_lower = BigFloat('-inf')
inv_upper = BigFloat('inf')
lw = [0, float('nan')]
uw = [float('nan'), 0]
# Interval is probably such that lower is greater than upper
else:
raise ValueError("Input interval is invalid for division")
return inv_lower, inv_upper, lw, uw
def EvaluateVector(pk,cl,ck,calcZ=True):
(pk0,x0,y)=pk
r=[]
if calcZ:
cl0=[]
for (i,j) in cl:
cl0.append(i)
else:
cl0=cl
ck.setReductionVector(x0) #This is added to Trees constructor
r0 = ck.eval(cl0)
if calcZ:
for c0 in r0:
z=[None]*(Params.bigo+1)
for i in range(1,Params.bigo+1):
k=bigfloat.mul(c0,y[i],bigfloat.precision(Params.kappa))
z[i]=float(bigfloat.mod(k,2,bigfloat.precision(Params.prec)))
c = (c0,z)
r.append(c)
else:
r=r0
return r
def transform_brute(s, l):
with precision(100):
ret = [BigFloat(0) for x in xrange(1 + s * (len(l)-1))]
for i, v in enumerate(l):
if i == 0:
continue
def rec(sum_, c):
if i == c:
ret[sum_] += BigFloat(v)/(BigFloat(s)**i)
else:
for x in xrange(1, s+1):
rec(sum_+x, c+1)
rec(0, 0)
return [x/sum(ret) for x in ret]
def get_boltzmann_distribution(energy_by_arm):
R = 8.3144621 # gas constant
T = 293.15 # room temperature
factor = 4184.0 # joules_per_kcal
boltzmann_distribution = []
for dG in energy_by_arm:
ps = []
total = bigfloat.BigFloat(0)
for energy in dG:
p = bigfloat.exp((-energy*factor)/(R*T), bigfloat.precision(1000))
ps.append(p)
total = bigfloat.add(total, p)
normal_ps = []
for p in ps:
normal_ps.append(float(bigfloat.div(p,total)))
boltzmann_distribution.append(numpy.array(normal_ps))
return boltzmann_distribution
def ExactIntegrationOfSinusKernel(t, a=None, b=None):
with bigfloat.precision(300):
if a == None and b == None:
return 0.5 * math.pi * math.sqrt(t) * (mpmath.angerj(0.5, t) -
mpmath.angerj(-0.5, t))
if a == None and b != None:
a = t
elif b == None:
b = 0.
mpmath.mp.pretty = True
pi = mpmath.mp.pi
pi = +pi
fcos = mpmath.fresnelc
fsin = mpmath.fresnels
arg_a = mpmath.sqrt(2 * (t - a) / mpmath.mp.pi)
arg_b = mpmath.sqrt(2 * (t - b) / mpmath.mp.pi)
return mpmath.sqrt(2 * mpmath.mp.pi) * (
(fsin(arg_b) - fsin(arg_a)) * mpmath.cos(t) +
(fcos(arg_a) - fcos(arg_b)) * mpmath.sin(t))
def transform(s, l):
with precision(100):
ret = [BigFloat(0) for x in xrange(1 + s * (len(l)-1))]
prev = [1]
for i, v in enumerate(l):
if i > 0:
f = BigFloat(1) / (BigFloat(s) ** i)
new = [BigFloat(0) for x in xrange(1 + s * i)]
for faceval in xrange(1, s+1):
for idx, val in enumerate(prev):
new[idx+faceval] += val
if v > 0:
for idx, val in enumerate(new):
ret[idx] += val * v * f
prev = new
# while ret[-1] == 0:
# ret.pop()
print("s = ", s, " ; ret = ", ["%f" % x for x in ret])
sys.stdout.flush()
return [x/sum(ret) for x in ret]
def get_free_energies(self):
"""
Give the free energy by
.. math::
F_{\\text{all configs}}(T, V) = - k_B T \ln Z_{\\text{all configs}}(T, V).
:return: The free energy on the temperature-volume grid.
"""
try:
import bigfloat
except ImportError:
raise ImportError(
"Install ``bigfloat`` package to use {0} object!".format(
self.__class__.__name__))
with bigfloat.precision(self.precision):
log_z = np.array([bigfloat.log(d) for d in self.total],
dtype=float)
return -K * self.temperature * log_z
def _static_part(self) -> Vector:
"""
Calculate the static contribution to the partition function.
:return: The static contribution on the temperature-volume grid.
"""
try:
import bigfloat
except ImportError:
raise ImportError(
"You need to install ``bigfloat`` package to use {0} object!".
format(self.__class__.__name__))
with bigfloat.precision(self.precision):
return np.array([
bigfloat.exp(d)
for d in # shape = (# of volumes for each configuration, 1)
logsumexp(-self.static_energies / (K * self.temperature),
axis=1,
b=self.degeneracies)
])
def calc_variance_brute(x12):
s = 20
with precision(100):
s_sq = [0, 0, 0]
for i, v in enumerate(x12):
if i > 0:
f = BigFloat(1) / (BigFloat(s) ** i)
print("i = ", i)
def rec(s_sq, sum_, c):
if (c == i):
s_sq[0] += f * v * sum_ * sum_
s_sq[1] += f * v * sum_
s_sq[2] += f * v
else:
for x in xrange(1, 21):
rec(s_sq, sum_+x, c+1)
rec(s_sq, 0, 0)
print("s_sq = ", s_sq)
return (BigFloat(s_sq[0])/BigFloat(s_sq[2]) -
((BigFloat(s_sq[1])/BigFloat(s_sq[2]))**2))
def calc_variance(x12):
from bigfloat import precision, BigFloat
num_faces = 20
with precision(100):
n = 0
s = 0
s_sq = BigFloat(0)
this_base_n = BigFloat(1)
base_s_sq = sum([x*x for x in xrange(1, 20+1)])
base_s = sum([x for x in xrange(1, 20+1)])
base_var = BigFloat(base_s_sq)/20 - BigFloat(base_s * base_s)/20/20
for i, v in enumerate(x12):
f = BigFloat(1) / (BigFloat(num_faces) ** i)
n += f * this_base_n * v
s += f * ((this_base_n * v * i * (1+20))*0.5)
var = base_var * i
var_less = var + BigFloat(base_s * base_s * i * i)/20/20
sq = var_less * this_base_n
s_sq += f * sq * v
this_base_n *= 20
return ((BigFloat(s_sq) / BigFloat(n)) -
((BigFloat(s)/BigFloat(n)) ** 2))
def permutation_collision_prob_bigfloat(n,
m,
w_in,
w_out,
precision=100,
debug=False):
'''
Define the set of matrices A_set with dimensions (m x n) with m <= n, exactly one 1 in each row,
and zero or one 1's in each column. Consider sampling a matrix A uniformly at random from A_set.
Inputs:
- n: int, columns in A
- m: int, rows in A
- w_in: int, hamming weight of a vector x which we will multiply with A
- w_out: int, we're interested in whether the vector Ax has hamming weight w_out
Outputs:
- prob: BigFloat, the probability that Ax has hamming weight w_out for any vector x with hamming weight w_in
'''
assert (m <= n)
assert (w_in <= n)
assert (w_out >= m - (n - w_in))
assert (w_out <= w_in and w_out <= m)
with bf.precision(precision):
#the number of matrices in A_set such that Ax has hamming weight w_out for any x with hamming weight w_in
prob = bigFloat_nCr(w_in, w_out) * bigFloat_nCr(n - w_in, m - w_out)
#divide by the number of matrices in A_set
prob /= bigFloat_nCr(n, m)
if debug:
A_set_size = bigFloat_nCr(n, m)
check_A_set_size = 0
for enum_w_out in range(max(0, m - (n - w_in)), min(w_in, m) + 1):
check_A_set_size += bigFloat_nCr(
w_in, enum_w_out) * bigFloat_nCr(n - w_in, m - enum_w_out)
# assert(np.abs(check_A_set_size - A_set_size) < .00001), (check_A_set_size, A_set_size)
return prob
def get_free_energies(self):
"""
The free energy calculated from the partition function :math:`Z_{\\text{all configs}}(T, V)` by
.. math::
F_{\\text{all configs}}(T, V) = - k_B T \ln Z_{\\text{all configs}}(T, V).
:return: The free energy on a temperature-volume grid.
"""
try:
import bigfloat
except ImportError:
raise ImportError(
"Install ``bigfloat`` package to use {0} object!".format(
self.__class__.__name__))
with bigfloat.precision(self.precision):
log_z = np.array([
bigfloat.log(d)
for d in self.partition_functions_for_each_configuration
],
dtype=float)
return -K * self.temperature * log_z
def Encrypt(pk,m,calcZ=True,s=None):
#s is the secret key to be used for debugging purposes
(pk0,x,y)=pk
c0 = SomeWhatEncrypt((pk0,x), m)
if calcZ:
z=[None]*(Params.bigo+1)
for i in range(1,Params.bigo+1):
k=bigfloat.mul(c0,y[i],bigfloat.precision((Params.kappa+Params.gamma)))
z[i]=float(bigfloat.mod(k,2.0,bigfloat.precision(Params.prec)))
if z[i]>=2.0:
z[i]=0
c = (c0,z)
else:
c = c0
if debug:
su=0
for i in range(1,Params.bigo+1):
if s and s[i]==1:
su=bigfloat.add(su,z[i],bigfloat.precision(Params.kappa+Params.gamma))
print "Enc_sum%2=",bigfloat.mod(su,8,bigfloat.precision((Params.prec+Params.gamma)))
q=bigfloat.div(c0,globsk,bigfloat.precision(Params.kappa+Params.gamma))
print "(Enc_c/sk)%2=",bigfloat.mod(q,8,bigfloat.precision((Params.prec+Params.gamma)))
print "c0=",c0
return c
def KeyGen(Lambda):
global globsk #For debugginh
(sk0,pk0)=SomeWhatKeyGen(Lambda)
globsk = sk0 #For debugging
#Params.kappa = int(Params.gamma * Params.eta / Params.rho1)
'''Tweak to approximate to nearest integer'''
t=sk0/2+1
xp=int((2**Params.kappa+t)/sk0) # Approximating to nearest integer
S = []
lenS=0
while lenS!=Params.theta:
i=random.randrange(1,Params.bigo)
if i not in S:
S.append(i)
lenS+=1
s={}
for i in range(1,Params.bigo+1):
if i in S:
s[i]=1
else:
s[i]=0
n = 2**(Params.kappa)
m = 2**(Params.kappa+1)
u = {}
approx = xp/Params.theta
var = approx/Params.theta
for i in range(1,Params.bigo+1):
u[i]=random.randrange(0,m)
su=0
for i in S[:-1]:
x =random.randrange(approx-var,approx+var)
u[i]=x
su+=u[i]
i=S[-1]
u[i]=xp-su
y={}
for i in range(1,Params.bigo+1):
y[i]=bigfloat.div(u[i],n,bigfloat.precision((Params.kappa+Params.gamma)))
#DEBUG
if debug:
su = 0
su2=0
for i in S:
su2+=u[i]
su=bigfloat.add(su,y[i],bigfloat.precision(Params.kappa+Params.gamma))
inv = bigfloat.mul(n,y[i],bigfloat.precision(Params.kappa+Params.gamma))
print u[i]
print inv
print "sumxp=",su2
print "sumf=",su
print "xp=", xp
print "xp/n=", bigfloat.div(xp,n,bigfloat.precision(Params.kappa+Params.gamma))
print "m=",m
print Params.theta
print Params.bigo
print S
print s
#END DEBUG
(pk1,x)=pk0
pk = (pk1,x,y)
return (s,pk)
# Deal with overflow in exp using numpy
import bigfloat
bigfloat.exp(5000,bigfloat.precision(100))
# -> BigFloat.exact('2.9676283840236670689662968052896e+2171', precision=100)
#!/usr/bin/python
from bigfloat import const_pi, precision
from string import translate, maketrans
print translate(str(const_pi(precision(5482))), maketrans('0123456789', '.Hdlro lwe'))
#!/usr/bin/env python
"""
Analyze the relationships between digits in pi.
"""
import bigfloat
from bigfloat import precision
import numpy
from scipy import stats
str_pi = str(bigfloat.atan2(+0.0, -0.0, precision(100000)))
# remove the "3." at the beginning of pi
pi = list(str_pi)
pi.pop(0)
pi.pop(0)
m = numpy.zeros(100).reshape((10, 10))
for i in range(0, len(pi)):
try:
m[pi[i], pi[i+1]] += 1 # count adjacent digits of pi
except IndexError:
pass
print(m)
print("Min: " + str(m.min()))
print("Max: " + str(m.max()))
print("Mode: " + str(stats.mode(m)))
from bigfloat import precision, setcontext, BigFloat
setcontext(precision(500))
f = BigFloat(0.1)
print f
for i in xrange(10000):
f /= 2
print f
# Deal with overflow in exp using numpy
import bigfloat
bigfloat.exp(5000, bigfloat.precision(100))
# -> BigFloat.exact('2.9676283840236670689662968052896e+2171', precision=100)
#!/usr/bin/python
from bigfloat import const_pi, precision
import math
import itertools
def convert_base(x, base=3, precision=None):
length_of_int = int(math.log(x, base))
iexps = range(length_of_int, -1, -1)
if precision == None:
fexps = itertools.count(-1, -1)
else:
fexps = range(-1, -int(precision + 1), -1)
def cbgen(x, base, exponents):
for e in exponents:
d = int(x // (base ** e))
x -= d * (base ** e)
yield d
if x == 0 and e < 0: break
return cbgen(int(x), base, iexps), cbgen(x - int(x), base, fexps)
gi, gf = convert_base(float(const_pi(precision(1000))), base=10)
print ''.join(map(str, gf))
#!/usr/bin/python from bigfloat import const_pi, precision from string import digits, maketrans, translate print translate(str(const_pi(precision(24746))), maketrans(digits, 'rd\neHwlo! ')) #print #print translate(str(const_pi(precision(5482))), maketrans(digits, '.Hdlro lwe'))
def longest_repeat(d):
context = bigfloat.precision(precision)
result_float = bigfloat.div(1, d, context=context)
result = str(result_float)[2:].strip('0')[:-fuzz]
result_len = len(result)
#print "d = {0}, result = {1}".format(d, result)
longest = ''
longest_len = 0
found = set()
for i in range(result_len):
remaining = result[i:]
for k in range(i+1, result_len):
substr = result[i:k]
substr_len = len(substr)
if substr == '0' * substr_len:
continue
new_substr = True
for f in found:
if substr == f:
new_substr = False
elif is_repeating(f, substr):
new_substr = False
if not new_substr:
continue
#print "new substring {0}".format(substr)
repeats = is_repeating(substr, remaining)
#print "substring {0} repeats {1} times".format(substr, repeats)
if repeats >= min_repeats:
#print "found repeating substring {0} (occurred {1} times)".format(substr, repeats, i=i, k=k)
found.add(substr)
if longest_len < substr_len:
#print "new longest substr!"
longest = substr
longest_len = substr_len
if remaining[1:] == remaining[1] * len(remaining[1:]):
#print "remaining string is all the same"
break
if found:
#print "Already found repeating substrings, short-circuiting"
break
if remaining == remaining[0] * len(remaining):
#print "remaining string is all the same"
break
if longest:
#print "longest substring for d = {0} is {1}".format(d, longest)
pass
return longest
#!/usr/bin/env python
from bigfloat import sqrt, precision
from pe_tools import is_square
def hundred_digit_sum(n):
s = str(n)
if '.' in s:
i = s.find('.')
s = s[:i] + s[i+1:]
s = s[:100]
return sum(map(int, s))
if __name__ == '__main__':
total = 0
for n in range(1, 100):
if not is_square(n):
s = hundred_digit_sum(sqrt(n, precision(340)))
total += s
print str(total)
class JMM:
def __init__(self):
self.a = self.b = None
def __iter__(self):
for value in self.values():
self.a, self.b = self.b, value
yield value
def values(self):
yield Fraction(2, 1)
yield Fraction(-4, 1)
while True:
def f(y, z):
a = Fraction(111, 1)
b = Fraction(1130, 1) / y
c = Fraction(3000, 1) / (z * y)
return a - b + c
yield f(self.b, self.a)
print(list(take(10, JMM())))
with precision(9000):
for a, b in zip(forever(0), JMM()):
fnumerator = BigFloat(b.numerator)
fdenominator = BigFloat(b.denominator)
big = fnumerator / fdenominator
strbig = str(big)[:140]
print(f"{a:>5}: {strbig} {b}")
#!/usr/bin/env python
import itertools
import os
import math
import bigfloat
from collections import defaultdict
# bfcontext = bigfloat.quadruple_precision
bfcontext = bigfloat.precision(1024)
def readverts(f):
# P = []
# for line in f:
# P.append(tuple(map(int, line.split(','))))
P = map(lambda line: tuple(map(int, line.split(","))), f)
return P
def angle_diff(a, b):
diff = a - b
twopi = 2.0 * math.pi
while diff < 0.0:
diff += twopi
while diff >= twopi:
diff -= twopi
return diff
def bfangle_diff(a, b):
diff = a - b
def get_pi_with_bigfloat(precision_in_bits):
"""precision is given in bits"""
from bigfloat import precision
import bigfloat
# cut "3." off
return str(bigfloat.atan2(+0.0,-0.0,precision(precision_in_bits)))[2:]
return d
def MultiBuddhabrot(numprocs, secs, its, width, height, rect=draw.FloatRect(2)):
manager = multiprocessing.Manager()
rlist = manager.list()
def fn(rlist):
print "start"
bud = Buddhabrot(secs, its, width, height, rect)
bud.populate()
rlist.append(bud)
procs = [multiprocessing.Process(target=fn,args=(rlist,)) for i in xrange(numprocs)]
[p.start() for p in procs]
[p.join() for p in procs]
result = Buddhabrot(secs, its, width, height, rect)
for bud in rlist:
result.data += bud.data
return result
if __name__ == '__main__':
bigfloat.setcontext(bigfloat.precision(52))
#man = Mandlebrot(100)
#d = draw.Draw(1024, 1024, draw.FloatRect(2.0))
# bud = MultiBuddhabrot(8, 10, [20,200,2000], 1024, 1024)
# bud.pickle("man.pck")
bud = cPickle.load(open("man.pck", "rb"))
bud.unpickle("man.npy")
d = bud.draw()
d.save("/vagrant/man.png")
for c in reversed(num_coeffs):
num = num * z + c
den = 0.0
for c in reversed(den_coeffs):
den = den * z + c
return num/den
def gamma(z, g, N):
return (z+g-0.5)**(z-0.5) / exp(z+g-0.5) * L(g, z, N)
# Now express everything as a rational function; we want to be
# able to figure out the coefficient of p_j z^k in the numerator.
# Let's call this coefficient b(j, k). It depends on N.
# b(j, N)[k] is the coefficient of p_j z^k in the numerator.
# except: b(0, N)[k] is the coefficient of p_0/2 z^k in the numerator.
p = 300 # bits of precision to use for computation
g = bigfloat.BigFloat(6.024680040776729583740234375)
N = 13
with bigfloat.precision(p):
print("Numerator coefficients:")
for c in Lg_num_coeffs(g, N):
print(c)
print("Denominator coefficients:")
for c in Lg_den_coeffs(g, N):
print(c)