def folderitems(self, **kwargs):
items = super(SampleImportsView, self).folderitems()
for x in range(len(items)):
if 'obj' not in items[x]:
continue
obj = items[x]['obj']
# NOTE: Some about obj that returns the brains and not the object
# it could be that folderitems has been changange on the listing
# this is a hack for to make it work
if api.is_brain(obj):
obj = obj.getObject()
# End of NOTE
items[x]['Title'] = obj.title_or_id()
if items[x]['review_state'] == 'invalid':
items[x]['replace']['Title'] = "<a href='%s/edit'>%s</a>" % (
obj.absolute_url(), items[x]['Title'])
else:
items[x]['replace']['Title'] = "<a href='%s/view'>%s</a>" % (
obj.absolute_url(), items[x]['Title'])
items[x]['Creator'] = obj.Creator()
items[x]['Filename'] = obj.getFilename()
parent = obj.aq_parent
items[x]['Client'] = parent if IClient.providedBy(parent) else ''
items[x]['replace']['Client'] = "<a href='%s'>%s</a>" % (
parent.absolute_url(), parent.Title())
items[x]['DateCreated'] = ulocalized_time(
obj.created(), long_format=True, time_only=False, context=obj)
date = getTransitionDate(obj, 'validate')
items[x]['DateValidated'] = date if date else ''
date = getTransitionDate(obj, 'import')
items[x]['DateImported'] = date if date else ''
return items
def folderitems(self, **kwargs):
items = super(ARImportsView, self).folderitems()
for x in range(len(items)):
if 'obj' not in items[x]:
continue
obj = items[x]['obj']
items[x]['Title'] = obj.title_or_id()
if items[x]['review_state'] == 'invalid':
items[x]['replace']['Title'] = "<a href='%s/edit'>%s</a>" % (
obj.absolute_url(), items[x]['Title'])
else:
items[x]['replace']['Title'] = "<a href='%s/view'>%s</a>" % (
obj.absolute_url(), items[x]['Title'])
items[x]['Creator'] = obj.Creator()
items[x]['Filename'] = obj.getFilename()
parent = obj.aq_parent
items[x]['Client'] = parent if IClient.providedBy(parent) else ''
items[x]['replace']['Client'] = "<a href='%s'>%s</a>" % (
parent.absolute_url(), parent.Title())
items[x]['DateCreated'] = ulocalized_time(
obj.created(), long_format=True, time_only=False, context=obj)
date = getTransitionDate(obj, 'validate')
items[x]['DateValidated'] = date if date else ''
date = getTransitionDate(obj, 'import')
items[x]['DateImported'] = date if date else ''
return items
def folderitems(self, **kwargs):
items = super(ARImportsView, self).folderitems()
for x in range(len(items)):
if 'obj' not in items[x]:
continue
obj = items[x]['obj']
items[x]['Title'] = obj.title_or_id()
if items[x]['review_state'] == 'invalid':
items[x]['replace']['Title'] = "<a href='%s/edit'>%s</a>" % (
obj.absolute_url(), items[x]['Title'])
else:
items[x]['replace']['Title'] = "<a href='%s/view'>%s</a>" % (
obj.absolute_url(), items[x]['Title'])
items[x]['Creator'] = obj.Creator()
items[x]['Filename'] = obj.getFilename()
parent = obj.aq_parent
items[x]['Client'] = parent if IClient.providedBy(parent) else ''
items[x]['replace']['Client'] = "<a href='%s'>%s</a>" % (
parent.absolute_url(), parent.Title())
items[x]['DateCreated'] = ulocalized_time(obj.created(),
long_format=True,
time_only=False,
context=obj)
date = getTransitionDate(obj, 'validate')
items[x]['DateValidated'] = date if date else ''
date = getTransitionDate(obj, 'import')
items[x]['DateImported'] = date if date else ''
return items
def get_sample_container_info(self):
"""Returns the storage container this Sample is stored in
"""
# Search the container the sample is stored in
query = {
"portal_type": "StorageSamplesContainer",
"get_samples_uids": api.get_uid(self.context)
}
brains = api.search(query, SENAITE_STORAGE_CATALOG)
if not brains:
return None
# Get the data info from the container
container = api.get_object(brains[0])
position = container.get_object_position(self.context)
position = container.position_to_alpha(position[0], position[1])
return {
"uid": api.get_uid(container),
"id": api.get_id(container),
"title": api.get_title(container),
"url": api.get_url(container),
"position": position,
"full_title": container.get_full_title(),
"when": wf.getTransitionDate(self.context, "store"),
}
def getDateVerified(self):
"""Returns the time the analysis was verified. If the analysis hasn't
been yet verified, returns None
:return: the time the analysis was verified or None
:rtype: DateTime
"""
return getTransitionDate(self, 'verify', return_as_datetime=True)
def getDateVerified(self):
"""Returns the time the analysis was verified. If the analysis hasn't
been yet verified, returns None
:return: the time the analysis was verified or None
:rtype: DateTime
"""
return getTransitionDate(self, 'verify', return_as_datetime=True)
def get_transition_date(self, obj, transition=None):
"""Returns the date of the given Transition
"""
if self.is_model(obj):
obj = obj.instance
if transition is None:
return None
return getTransitionDate(obj, transition, return_as_datetime=True)
def folderitem(self, obj, item, index):
# Additional info from AnalysisRequest to be added in the item generated
# by default by bikalisting.
# Call the folderitem method from the base class
item = BikaListingView.folderitem(self, obj, item, index)
if not item:
return None
member = self.mtool.getAuthenticatedMember()
roles = member.getRoles()
hideclientlink = 'RegulatoryInspector' in roles \
and 'Manager' not in roles \
and 'LabManager' not in roles \
and 'LabClerk' not in roles
sample = obj.getSample()
url = obj.absolute_url()
if getSecurityManager().checkPermission(EditResults, obj):
url += "/manage_results"
item['Client'] = obj.aq_parent.Title()
if (hideclientlink == False):
item['replace']['Client'] = "<a href='%s'>%s</a>" % \
(obj.aq_parent.absolute_url(), obj.aq_parent.Title())
item['Creator'] = self.user_fullname(obj.Creator())
item['getRequestID'] = obj.getRequestID()
item['replace']['getRequestID'] = "<a href='%s'>%s</a>" % \
(url, item['getRequestID'])
item['getSample'] = sample
item['replace']['getSample'] = \
"<a href='%s'>%s</a>" % (sample.absolute_url(), sample.Title())
item['replace']['getProfilesTitle'] = ", ".join(
[p.Title() for p in obj.getProfiles()])
analysesnum = obj.getAnalysesNum()
if analysesnum:
item['getAnalysesNum'] = str(analysesnum[0]) + '/' + str(analysesnum[1])
else:
item['getAnalysesNum'] = ''
batch = obj.getBatch()
if batch:
item['BatchID'] = batch.getBatchID()
item['replace']['BatchID'] = "<a href='%s'>%s</a>" % \
(batch.absolute_url(), item['BatchID'])
else:
item['BatchID'] = ''
val = obj.Schema().getField('SubGroup').get(obj)
item['SubGroup'] = val.Title() if val else ''
samplingdate = obj.getSample().getSamplingDate()
item['SamplingDate'] = self.ulocalized_time(samplingdate, long_format=1)
item['getDateReceived'] = self.ulocalized_time(obj.getDateReceived())
item['getDatePublished'] = self.ulocalized_time(obj.getDatePublished())
items[x]['getDateVerified'] = getTransitionDate(obj, 'verify')
def after_receive(analysis_request):
"""Method triggered after "receive" transition for the Analysis Request
passed in is performed
"""
events.after_receive(analysis_request)
# Set the date the Sample was received at the lab, not at point of testing
# https://github.com/bhp-lims/bhp.lims/issues/233
date_received = wf.getTransitionDate(analysis_request, "deliver", True)
if date_received:
analysis_request.setDateReceived(date_received)
events.do_action_to_ancestors(analysis_request, "receive")
events.do_action_to_descendants(analysis_request, "receive")
def fix_i233(portal):
"""Set the date the Sample was received at the lab, not at point of testing
https://github.com/bhp-lims/bhp.lims/issues/233
"""
logger.info("Reseting Date Received (#233) ...")
brains = api.search({}, CATALOG_ANALYSIS_REQUEST_LISTING)
total = len(brains)
for num, brain in enumerate(brains):
if num % 100 == 0:
logger.info("Reseting Date Received: {}/{}".format(num, total))
if num % TRANSACTION_THERESHOLD == 0:
commit_transaction(portal)
sample = api.get_object(brain)
date_received = getTransitionDate(sample, "deliver", True)
if date_received and date_received != sample.getDateReceived():
sample.setDateReceived(date_received)
sample.reindexObject(idxs=["getDateReceived", "is_received"])
logger.info("Reseting Date Received (#233) [DONE]")
def createInvoice(self, client_title, items):
""" Creates and invoice for a client and a set of items
"""
plone_view = self.restrictedTraverse('@@plone')
invoice_id = self.generateUniqueId('Invoice')
invoice = _createObjectByType("Invoice", self, invoice_id)
pc = getToolByName(self, "portal_catalog")
client = pc(portal_type="Client", getName=client_title)[0].getObject()
invoice.edit(
Client=client,
InvoiceDate=DateTime(),
)
invoice.processForm()
invoice.invoice_lineitems = []
for item in items:
lineitem = InvoiceLineItem()
if item.portal_type == 'AnalysisRequest':
lineitem['ItemDate'] = plone_view.toLocalizedTime(
getTransitionDate(item, 'publish'), long_format=1)
lineitem['OrderNumber'] = item.getRequestID()
lineitem['AnalysisRequest'] = item
lineitem['SupplyOrder'] = ''
description = get_invoice_item_description(item)
lineitem['ItemDescription'] = description
elif item.portal_type == 'SupplyOrder':
lineitem['ItemDate'] = item.getDateDispatched()
lineitem['OrderNumber'] = item.getOrderNumber()
lineitem['AnalysisRequest'] = ''
lineitem['SupplyOrder'] = item
description = get_invoice_item_description(item)
lineitem['ItemDescription'] = description
lineitem['Subtotal'] = item.getSubtotal()
lineitem['VATAmount'] = item.getVATAmount()
lineitem['Total'] = item.getTotal()
invoice.invoice_lineitems.append(lineitem)
invoice.reindexObject()
return invoice
def createInvoice(self, client_title, items):
""" Creates and invoice for a client and a set of items
"""
plone_view = self.restrictedTraverse('@@plone')
invoice_id = self.generateUniqueId('Invoice')
invoice = _createObjectByType("Invoice", self, invoice_id)
pc = getToolByName(self, "portal_catalog")
client = pc(portal_type="Client", getName=client_title)[0].getObject()
invoice.edit(
Client=client,
InvoiceDate=DateTime(),
)
invoice.processForm()
invoice.invoice_lineitems = []
for item in items:
lineitem = InvoiceLineItem()
if item.portal_type == 'AnalysisRequest':
lineitem['ItemDate'] = plone_view.toLocalizedTime(
getTransitionDate(item, 'publish'), long_format=1)
lineitem['OrderNumber'] = item.getRequestID()
lineitem['AnalysisRequest'] = item
lineitem['SupplyOrder'] = ''
description = get_invoice_item_description(item)
lineitem['ItemDescription'] = description
elif item.portal_type == 'SupplyOrder':
lineitem['ItemDate'] = item.getDateDispatched()
lineitem['OrderNumber'] = item.getOrderNumber()
lineitem['AnalysisRequest'] = ''
lineitem['SupplyOrder'] = item
description = get_invoice_item_description(item)
lineitem['ItemDescription'] = description
lineitem['Subtotal'] = item.getSubtotal()
lineitem['VATAmount'] = item.getVATAmount()
lineitem['Total'] = item.getTotal()
invoice.invoice_lineitems.append(lineitem)
invoice.reindexObject()
return invoice
def __call__(self):
bc = getToolByName(self.context, 'bika_catalog')
self.report_content = {}
parm_lines = {}
parms = []
headings = {}
headings['header'] = _("Samples not invoiced")
headings['subheader'] = _(
"Published Samples which have not been invoiced")
count_all = 0
query = {'portal_type': 'AnalysisRequest',
'getInvoiced': False,
'review_state': 'published',
'sort_order': 'reverse'}
date_query = formatDateQuery(self.context, 'c_DatePublished')
if date_query:
query['getDatePublished'] = date_query
pubished = formatDateParms(self.context, 'c_DatePublished')
else:
pubished = 'Undefined'
parms.append(
{'title': _('Published'),
'value': pubished,
'type': 'text'})
parms.append(
{'title': _('Active'),
'value': 'Undefined',
'type': 'text'})
# and now lets do the actual report lines
formats = {'columns': 6,
'col_heads': [_('Client'), \
_('Request'), \
_('Sample type'), \
_('Sample point'), \
_('Published'), \
_('Amount'), \
],
'class': '',
}
datalines = []
clients = {}
sampletypes = {}
samplepoints = {}
categories = {}
services = {}
for ar_proxy in bc(query):
ar = ar_proxy.getObject()
dataline = []
dataitem = {'value': ar.aq_parent.Title()}
dataline.append(dataitem)
dataitem = {'value': ar.getId()}
dataline.append(dataitem)
dataitem = {'value': ar.getSampleTypeTitle()}
dataline.append(dataitem)
dataitem = {'value': ar.getSamplePointTitle()}
dataline.append(dataitem)
dataitem = {'value':
self.ulocalized_time(getTransitionDate(ar, 'publish'),
long_format=True)}
dataline.append(dataitem)
dataitem = {'value': ar.getTotalPrice()}
dataline.append(dataitem)
datalines.append(dataline)
count_all += 1
# table footer data
footlines = []
footline = []
footitem = {'value': _('Number of analyses retested for period'),
'colspan': 5,
'class': 'total_label'}
footline.append(footitem)
footitem = {'value': count_all}
footline.append(footitem)
footlines.append(footline)
self.report_content = {
'headings': headings,
'parms': parms,
'formats': formats,
'datalines': datalines,
'footings': footlines}
return {'report_title': t(headings['header']),
'report_data': self.template()}
def getDateSampled(self):
"""Used to populate catalog values.
Only has value when sampling_workflow is active.
"""
return getTransitionDate(self, 'sample', return_as_datetime=True)
def getDateReceived(self):
"""Used to populate catalog values.
Returns the date on which the "receive" transition was invoked on this
analysis' Sample.
"""
return getTransitionDate(self, 'receive', return_as_datetime=True)
def __call__(self):
bc = getToolByName(self.context, 'bika_catalog')
self.report_content = {}
parm_lines = {}
parms = []
headings = {}
headings['header'] = _("Analysis requests not invoiced")
headings['subheader'] = _(
"Published Analysis Requests which have not been invoiced")
count_all = 0
query = {'portal_type': 'AnalysisRequest',
'getInvoiced': False,
'review_state': 'published',
'sort_order': 'reverse'}
date_query = formatDateQuery(self.context, 'c_DatePublished')
if date_query:
query['getDatePublished'] = date_query
pubished = formatDateParms(self.context, 'c_DatePublished')
else:
pubished = 'Undefined'
parms.append(
{'title': _('Published'),
'value': pubished,
'type': 'text'})
if self.request.form.has_key('cancellation_state'):
query['cancellation_state'] = self.request.form['cancellation_state']
cancellation_state = wf_tool.getTitleForStateOnType(
self.request.form['cancellation_state'], 'AnalysisRequest')
else:
cancellation_state = 'Undefined'
parms.append(
{'title': _('Active'),
'value': cancellation_state,
'type': 'text'})
# and now lets do the actual report lines
formats = {'columns': 6,
'col_heads': [_('Client'), \
_('Request'), \
_('Sample type'), \
_('Sample point'), \
_('Published'), \
_('Amount'), \
],
'class': '',
}
datalines = []
clients = {}
sampletypes = {}
samplepoints = {}
categories = {}
services = {}
for ar_proxy in bc(query):
ar = ar_proxy.getObject()
dataline = []
dataitem = {'value': ar.aq_parent.Title()}
dataline.append(dataitem)
dataitem = {'value': ar.getRequestID()}
dataline.append(dataitem)
dataitem = {'value': ar.getSampleTypeTitle()}
dataline.append(dataitem)
dataitem = {'value': ar.getSamplePointTitle()}
dataline.append(dataitem)
dataitem = {'value':
self.ulocalized_time(getTransitionDate(ar, 'publish'),
long_format=True)}
dataline.append(dataitem)
dataitem = {'value': ar.getTotalPrice()}
dataline.append(dataitem)
datalines.append(dataline)
count_all += 1
# table footer data
footlines = []
footline = []
footitem = {'value': _('Number of analyses retested for period'),
'colspan': 5,
'class': 'total_label'}
footline.append(footitem)
footitem = {'value': count_all}
footline.append(footitem)
footlines.append(footline)
self.report_content = {
'headings': headings,
'parms': parms,
'formats': formats,
'datalines': datalines,
'footings': footlines}
return {'report_title': t(headings['header']),
'report_data': self.template()}
def getDateSubmitted(self):
"""Returns the time the result was submitted.
:return: a DateTime object.
:rtype: DateTime
"""
return getTransitionDate(self, 'submit', return_as_datetime=True)
def __call__(self):
bc = getToolByName(self.context, "bika_catalog")
self.report_content = {}
parm_lines = {}
parms = []
headings = {}
headings["header"] = _("Analysis requests not invoiced")
headings["subheader"] = _("Published Analysis Requests which have not been invoiced")
count_all = 0
query = {
"portal_type": "AnalysisRequest",
"getInvoiced": False,
"review_state": "published",
"sort_order": "reverse",
}
date_query = formatDateQuery(self.context, "c_DatePublished")
if date_query:
query["getDatePublished"] = date_query
pubished = formatDateParms(self.context, "c_DatePublished")
else:
pubished = "Undefined"
parms.append({"title": _("Published"), "value": pubished, "type": "text"})
if self.request.form.has_key("cancellation_state"):
query["cancellation_state"] = self.request.form["cancellation_state"]
cancellation_state = wf_tool.getTitleForStateOnType(
self.request.form["cancellation_state"], "AnalysisRequest"
)
else:
cancellation_state = "Undefined"
parms.append({"title": _("Active"), "value": cancellation_state, "type": "text"})
# and now lets do the actual report lines
formats = {
"columns": 6,
"col_heads": [_("Client"), _("Request"), _("Sample type"), _("Sample point"), _("Published"), _("Amount")],
"class": "",
}
datalines = []
clients = {}
sampletypes = {}
samplepoints = {}
categories = {}
services = {}
for ar_proxy in bc(query):
ar = ar_proxy.getObject()
dataline = []
dataitem = {"value": ar.aq_parent.Title()}
dataline.append(dataitem)
dataitem = {"value": ar.getRequestID()}
dataline.append(dataitem)
dataitem = {"value": ar.getSampleTypeTitle()}
dataline.append(dataitem)
dataitem = {"value": ar.getSamplePointTitle()}
dataline.append(dataitem)
dataitem = {"value": self.ulocalized_time(getTransitionDate(ar, "publish"), long_format=True)}
dataline.append(dataitem)
dataitem = {"value": ar.getTotalPrice()}
dataline.append(dataitem)
datalines.append(dataline)
count_all += 1
# table footer data
footlines = []
footline = []
footitem = {"value": _("Number of analyses retested for period"), "colspan": 5, "class": "total_label"}
footline.append(footitem)
footitem = {"value": count_all}
footline.append(footitem)
footlines.append(footline)
self.report_content = {
"headings": headings,
"parms": parms,
"formats": formats,
"datalines": datalines,
"footings": footlines,
}
return {"report_title": t(headings["header"]), "report_data": self.template()}
def folderitem(self, obj, item, index):
# Additional info from AnalysisRequest to be added in the item generated
# by default by bikalisting.
# Call the folderitem method from the base class
item = BikaListingView.folderitem(self, obj, item, index)
if not item:
return None
member = self.mtool.getAuthenticatedMember()
roles = member.getRoles()
hideclientlink = 'RegulatoryInspector' in roles \
and 'Manager' not in roles \
and 'LabManager' not in roles \
and 'LabClerk' not in roles
sample = obj.getSample()
url = obj.absolute_url()
if getSecurityManager().checkPermission(EditResults, obj):
url += "/manage_results"
item['Client'] = obj.aq_parent.Title()
if (hideclientlink == False):
item['replace']['Client'] = "<a href='%s'>%s</a>" % \
(obj.aq_parent.absolute_url(), obj.aq_parent.Title())
item['Creator'] = self.user_fullname(obj.Creator())
item['getRequestID'] = obj.getRequestID()
item['replace']['getRequestID'] = "<a href='%s'>%s</a>" % \
(url, item['getRequestID'])
item['getSample'] = sample
item['replace']['getSample'] = \
"<a href='%s'>%s</a>" % (sample.absolute_url(), sample.Title())
item['replace']['getProfilesTitle'] = ", ".join(
[p.Title() for p in obj.getProfiles()])
analysesnum = obj.getAnalysesNum()
if analysesnum:
item['getAnalysesNum'] = str(analysesnum[0]) + '/' + str(
analysesnum[1])
else:
item['getAnalysesNum'] = ''
batch = obj.getBatch()
if batch:
item['BatchID'] = batch.getBatchID()
item['replace']['BatchID'] = "<a href='%s'>%s</a>" % \
(batch.absolute_url(), item['BatchID'])
else:
item['BatchID'] = ''
val = obj.Schema().getField('SubGroup').get(obj)
item['SubGroup'] = val.Title() if val else ''
sd = obj.getSample().getSamplingDate()
item['SamplingDate'] = \
self.ulocalized_time(sd, long_format=1) if sd else ''
item['getDateReceived'] = \
self.ulocalized_time(obj.getDateReceived())
item['getDatePublished'] = \
self.ulocalized_time(getTransitionDate(obj, 'publish'))
item['getDateVerified'] = \
self.ulocalized_time(getTransitionDate(obj, 'verify'))
deviation = sample.getSamplingDeviation()
item['SamplingDeviation'] = deviation and deviation.Title() or ''
priority = obj.getPriority()
item['Priority'] = '' # priority.Title()
item['getStorageLocation'] = sample.getStorageLocation(
) and sample.getStorageLocation().Title() or ''
item['AdHoc'] = sample.getAdHoc() and True or ''
after_icons = ""
state = self.workflow.getInfoFor(obj, 'worksheetanalysis_review_state')
if state == 'assigned':
after_icons += "<img src='%s/++resource++bika.lims.images/worksheet.png' title='%s'/>" % \
(self.portal_url, t(_("All analyses assigned")))
if self.workflow.getInfoFor(obj, 'review_state') == 'invalid':
after_icons += "<img src='%s/++resource++bika.lims.images/delete.png' title='%s'/>" % \
(self.portal_url, t(_("Results have been withdrawn")))
if obj.getLate():
after_icons += "<img src='%s/++resource++bika.lims.images/late.png' title='%s'>" % \
(self.portal_url, t(_("Late Analyses")))
if sd and sd > DateTime():
after_icons += "<img src='%s/++resource++bika.lims.images/calendar.png' title='%s'>" % \
(self.portal_url, t(_("Future dated sample")))
if obj.getInvoiceExclude():
after_icons += "<img src='%s/++resource++bika.lims.images/invoice_exclude.png' title='%s'>" % \
(self.portal_url, t(_("Exclude from invoice")))
if sample.getSampleType().getHazardous():
after_icons += "<img src='%s/++resource++bika.lims.images/hazardous.png' title='%s'>" % \
(self.portal_url, t(_("Hazardous")))
if after_icons:
item['after']['getRequestID'] = after_icons
item['Created'] = self.ulocalized_time(obj.created())
contact = obj.getContact()
if contact:
item['ClientContact'] = contact.Title()
item['replace']['ClientContact'] = "<a href='%s'>%s</a>" % \
(contact.absolute_url(), contact.Title())
else:
item['ClientContact'] = ""
SamplingWorkflowEnabled = sample.getSamplingWorkflowEnabled()
if SamplingWorkflowEnabled and (not sd or not sd > DateTime()):
datesampled = self.ulocalized_time(sample.getDateSampled(),
long_format=True)
if not datesampled:
datesampled = self.ulocalized_time(DateTime(),
long_format=True)
item['class']['getDateSampled'] = 'provisional'
sampler = sample.getSampler().strip()
if sampler:
item['replace']['getSampler'] = self.user_fullname(sampler)
if 'Sampler' in member.getRoles() and not sampler:
sampler = member.id
item['class']['getSampler'] = 'provisional'
else:
datesampled = ''
sampler = ''
item['getDateSampled'] = datesampled
item['getSampler'] = sampler
# sampling workflow - inline edits for Sampler and Date Sampled
checkPermission = self.context.portal_membership.checkPermission
state = self.workflow.getInfoFor(obj, 'review_state')
if state == 'to_be_sampled' \
and checkPermission(SampleSample, obj) \
and (not sd or not sd > DateTime()):
item['required'] = ['getSampler', 'getDateSampled']
item['allow_edit'] = ['getSampler', 'getDateSampled']
samplers = getUsers(sample, ['Sampler', 'LabManager', 'Manager'])
username = member.getUserName()
users = [({
'ResultValue': u,
'ResultText': samplers.getValue(u)
}) for u in samplers]
item['choices'] = {'getSampler': users}
Sampler = sampler and sampler or \
(username in samplers.keys() and username) or ''
item['getSampler'] = Sampler
# These don't exist on ARs
# XXX This should be a list of preservers...
item['getPreserver'] = ''
item['getDatePreserved'] = ''
# inline edits for Preserver and Date Preserved
checkPermission = self.context.portal_membership.checkPermission
if checkPermission(PreserveSample, obj):
item['required'] = ['getPreserver', 'getDatePreserved']
item['allow_edit'] = ['getPreserver', 'getDatePreserved']
preservers = getUsers(obj, ['Preserver', 'LabManager', 'Manager'])
username = member.getUserName()
users = [({
'ResultValue': u,
'ResultText': preservers.getValue(u)
}) for u in preservers]
item['choices'] = {'getPreserver': users}
preserver = username in preservers.keys() and username or ''
item['getPreserver'] = preserver
item['getDatePreserved'] = self.ulocalized_time(DateTime(),
long_format=1)
item['class']['getPreserver'] = 'provisional'
item['class']['getDatePreserved'] = 'provisional'
# Submitting user may not verify results
if item['review_state'] == 'to_be_verified':
username = member.getUserName()
allowed = api.user.has_permission(VerifyPermission,
username=username)
if allowed and not obj.isUserAllowedToVerify(member):
item['after']['state_title'] = \
"<img src='++resource++bika.lims.images/submitted-by-current-user.png' title='%s'/>" % \
t(_("Cannot verify: Submitted by current user"))
return item
def getDateReceived(self):
"""Used to populate catalog values.
Returns the date on which the "receive" transition was invoked on this
analysis' Sample.
"""
return getTransitionDate(self, 'receive', return_as_datetime=True)
def getDateImported(instance):
return getTransitionDate(instance, 'import')
def getDateValidated(instance):
return getTransitionDate(instance, 'validate')
def __call__(self):
parms = []
titles = []
# Apply filters
self.contentFilter = {'portal_type': 'AnalysisRequest'}
val = self.selection_macros.parse_daterange(self.request,
'created',
_('Date Created'))
if val:
self.contentFilter[val['contentFilter'][0]] = val['contentFilter'][1]
parms.append(val['parms'])
titles.append(val['titles'])
# Query the catalog and store results in a dictionary
catalog = getToolByName(self.context, CATALOG_ANALYSIS_REQUEST_LISTING)
ars = catalog(self.contentFilter)
if not ars:
message = _("No Analysis Requests matched your query")
self.context.plone_utils.addPortalMessage(message, "error")
return self.default_template()
datalines = {}
footlines = {}
totalcreatedcount = len(ars)
totalreceivedcount = 0
totalpublishedcount = 0
totalanlcount = 0
totalreceptionlag = 0
totalpublicationlag = 0
for ar in ars:
ar = ar.getObject()
datecreated = ar.created()
datereceived = ar.getDateReceived()
datepublished = getTransitionDate(ar, 'publish')
receptionlag = 0
publicationlag = 0
anlcount = len(ar.getAnalyses())
dataline = {
"AnalysisRequestID": ar.getId(),
"DateCreated": self.ulocalized_time(datecreated),
"DateReceived": self.ulocalized_time(datereceived),
"DatePublished": self.ulocalized_time(datepublished),
"ReceptionLag": receptionlag,
"PublicationLag": publicationlag,
"TotalLag": receptionlag + publicationlag,
"BatchID": ar.getBatch().getId() if ar.getBatch() else '',
"SampleID": ar.getSample().Title(),
"SampleType": ar.getSampleTypeTitle(),
"NumAnalyses": anlcount,
"ClientID": ar.aq_parent.id,
"Creator": ar.Creator(),
"Remarks": ar.getRemarks()
}
datalines[ar.getId()] = dataline
totalreceivedcount += ar.getDateReceived() and 1 or 0
totalpublishedcount += 1 if datepublished else 0
totalanlcount += anlcount
totalreceptionlag += receptionlag
totalpublicationlag += publicationlag
# Footer total data
totalreceivedcreated_ratio = float(totalreceivedcount) / float(
totalcreatedcount)
totalpublishedcreated_ratio = float(totalpublishedcount) / float(
totalcreatedcount)
totalpublishedreceived_ratio = totalreceivedcount and float(
totalpublishedcount) / float(totalreceivedcount) or 0
footline = {'Created': totalcreatedcount,
'Received': totalreceivedcount,
'Published': totalpublishedcount,
'ReceivedCreatedRatio': totalreceivedcreated_ratio,
'ReceivedCreatedRatioPercentage': ('{0:.0f}'.format(
totalreceivedcreated_ratio * 100)) + "%",
'PublishedCreatedRatio': totalpublishedcreated_ratio,
'PublishedCreatedRatioPercentage': ('{0:.0f}'.format(
totalpublishedcreated_ratio * 100)) + "%",
'PublishedReceivedRatio': totalpublishedreceived_ratio,
'PublishedReceivedRatioPercentage': ('{0:.0f}'.format(
totalpublishedreceived_ratio * 100)) + "%",
'AvgReceptionLag': (
'{0:.1f}'.format(totalreceptionlag / totalcreatedcount)),
'AvgPublicationLag': (
'{0:.1f}'.format(totalpublicationlag / totalcreatedcount)),
'AvgTotalLag': ('{0:.1f}'.format((
totalreceptionlag + totalpublicationlag) / totalcreatedcount)),
'NumAnalyses': totalanlcount
}
footlines['Total'] = footline
self.report_data = {'parameters': parms,
'datalines': datalines,
'footlines': footlines}
if self.request.get('output_format', '') == 'CSV':
import csv
import StringIO
import datetime
fieldnames = [
"AnalysisRequestID",
"DateCreated",
"DateReceived",
"DatePublished",
"ReceptionLag",
"PublicationLag",
"TotalLag",
"BatchID",
"SampleID",
"SampleType",
"NumAnalyses",
"ClientID",
"Creator",
"Remarks",
]
output = StringIO.StringIO()
dw = csv.DictWriter(output, extrasaction='ignore',
fieldnames=fieldnames)
dw.writerow(dict((fn, fn) for fn in fieldnames))
for ar_id, row in datalines.items():
dw.writerow({
"AnalysisRequestID": row["AnalysisRequestID"],
"DateCreated": row["DateCreated"],
"DateReceived": row["DateReceived"],
"DatePublished": row["DatePublished"],
"ReceptionLag": row["ReceptionLag"],
"PublicationLag": row["PublicationLag"],
"TotalLag": row["TotalLag"],
"BatchID": row["BatchID"],
"SampleID": row["SampleID"],
"SampleType": row["SampleType"],
"NumAnalyses": row["NumAnalyses"],
"ClientID": row["ClientID"],
"Creator": row["Creator"],
"Remarks": row["Remarks"],
})
report_data = output.getvalue()
output.close()
date = datetime.datetime.now().strftime("%Y%m%d%H%M")
setheader = self.request.RESPONSE.setHeader
setheader('Content-Type', 'text/csv')
setheader("Content-Disposition",
"attachment;filename=\"dataentrydaybook_%s.csv\"" % date)
self.request.RESPONSE.write(report_data)
else:
return {'report_title': _('Data entry day book'),
'report_data': self.template()}
def getDateSubmitted(self):
"""Returns the time the result was submitted.
:return: a DateTime object.
:rtype: DateTime
"""
return getTransitionDate(self, 'submit', return_as_datetime=True)
def __call__(self):
context = self.context
workflow = getToolByName(context, 'portal_workflow')
# Collect related data and objects
invoice = context.getInvoice()
sample = context.getSample()
samplePoint = sample.getSamplePoint()
reviewState = workflow.getInfoFor(context, 'review_state')
# Collection invoice information
if invoice:
self.invoiceId = invoice.getId()
else:
self.invoiceId = _('Proforma (Not yet invoiced)')
# Collect verified invoice information
verified = reviewState in VERIFIED_STATES
if verified:
self.verifiedBy = context.getVerifier()
self.verified = verified
self.request['verified'] = verified
# Collect published date
self.datePublished = \
self.ulocalized_time(getTransitionDate(context, 'publish'),
long_format=1)
# Collect received date
dateReceived = context.getDateReceived()
if dateReceived is not None:
dateReceived = self.ulocalized_time(dateReceived, long_format=1)
self.dateReceived = dateReceived
# Collect general information
self.reviewState = reviewState
contact = context.getContact()
self.contact = contact.Title() if contact else ""
self.clientOrderNumber = context.getClientOrderNumber()
self.clientReference = context.getClientReference()
self.clientSampleId = sample.getClientSampleID()
self.sampleType = sample.getSampleType().Title()
self.samplePoint = samplePoint and samplePoint.Title()
self.requestId = context.getId()
self.headers = [
{
'title': 'Invoice ID',
'value': self.invoiceId
},
{
'title': 'Client Reference',
'value': self.clientReference
},
{
'title': 'Sample Type',
'value': self.sampleType
},
{
'title': 'Request ID',
'value': self.requestId
},
{
'title': 'Date Received',
'value': self.dateReceived
},
]
if not isAttributeHidden('AnalysisRequest', 'ClientOrderNumber'):
self.headers.append({
'title': 'Client Sample Id',
'value': self.clientOrderNumber
})
if not isAttributeHidden('AnalysisRequest', 'SamplePoint'):
self.headers.append({
'title': 'Sample Point',
'value': self.samplePoint
})
if self.verified:
self.headers.append({
'title': 'Verified By',
'value': self.verifiedBy
})
if self.datePublished:
self.headers.append({
'title': 'datePublished',
'value': self.datePublished
})
analyses = []
profiles = []
# Retrieve required data from analyses collection
all_analyses, all_profiles, analyses_from_profiles = context.getServicesAndProfiles(
)
# Relating category with solo analysis
for analysis in all_analyses:
categoryName = analysis.getCategoryTitle()
# Find the category
try:
category = (o for o in analyses
if o['name'] == categoryName).next()
except:
category = {'name': categoryName, 'analyses': []}
analyses.append(category)
# Append the analysis to the category
category['analyses'].append({
'title':
analysis.Title(),
'price':
analysis.getPrice(),
'priceVat':
"%.2f" % analysis.getVATAmount(),
'priceTotal':
"%.2f" % analysis.getTotalPrice(),
})
# Relating analysis services with their profiles
# We'll take the analysis contained on each profile
for profile in all_profiles:
# If profile's checkbox "Use Analysis Profile Price" is enabled, only the profile price will be displayed.
# Otherwise each analysis will display its own price.
pservices = []
if profile.getUseAnalysisProfilePrice():
# We have to use the profiles price only
for pservice in profile.getService():
pservices.append({
'title': pservice.Title(),
'price': None,
'priceVat': None,
'priceTotal': None,
})
profiles.append({
'name': profile.title,
'price': profile.getAnalysisProfilePrice(),
'priceVat': profile.getVATAmount(),
'priceTotal': profile.getTotalPrice(),
'analyses': pservices
})
else:
# We need the analyses prices instead of profile price
for pservice in profile.getService():
# We want the analysis instead of the service, because we want the price for the client
# (for instance the bulk price)
panalysis = self._getAnalysisForProfileService(
pservice.getKeyword(), analyses_from_profiles)
pservices.append({
'title':
pservice.Title(),
'price':
panalysis.getPrice()
if panalysis else pservice.getPrice(),
'priceVat':
"%.2f" % panalysis.getVATAmount()
if panalysis else pservice.getVATAmount(),
'priceTotal':
"%.2f" % panalysis.getTotalPrice()
if panalysis else pservice.getTotalPrice(),
})
profiles.append({
'name': profile.title,
'price': None,
'priceVat': None,
'priceTotal': None,
'analyses': pservices
})
self.analyses = analyses
self.profiles = profiles
# Get subtotals
self.subtotal = context.getSubtotal()
self.subtotalVATAmount = "%.2f" % context.getSubtotalVATAmount()
self.subtotalTotalPrice = "%.2f" % context.getSubtotalTotalPrice()
# Get totals
self.memberDiscount = Decimal(context.getDefaultMemberDiscount())
self.discountAmount = context.getDiscountAmount()
self.VATAmount = "%.2f" % context.getVATAmount()
self.totalPrice = "%.2f" % context.getTotalPrice()
# Render the template
return self.template()
def getDatePublished(self):
"""Used to populate catalog values.
Returns the date on which the "publish" transition was invoked on this
analysis.
"""
return getTransitionDate(self, 'publish', return_as_datetime=True)
def getDateSampled(self):
"""Used to populate catalog values.
Only has value when sampling_workflow is active.
"""
return getTransitionDate(self, 'sample', return_as_datetime=True)
def getDatePublished(self):
"""Used to populate catalog values.
Returns the date on which the "publish" transition was invoked on this
analysis.
"""
return getTransitionDate(self, 'publish', return_as_datetime=True)
def __call__(self):
context = self.context
workflow = getToolByName(context, 'portal_workflow')
# Collect related data and objects
invoice = context.getInvoice()
sample = context.getSample()
samplePoint = sample.getSamplePoint()
reviewState = workflow.getInfoFor(context, 'review_state')
# Collection invoice information
if invoice:
self.invoiceId = invoice.getId()
else:
self.invoiceId = _('Proforma (Not yet invoiced)')
# Collect verified invoice information
verified = reviewState in VERIFIED_STATES
if verified:
self.verifiedBy = context.getVerifier()
self.verified = verified
self.request['verified'] = verified
# Collect published date
self.datePublished = \
self.ulocalized_time(getTransitionDate(context, 'publish'),
long_format=1)
# Collect received date
dateReceived = context.getDateReceived()
if dateReceived is not None:
dateReceived = self.ulocalized_time(dateReceived, long_format=1)
self.dateReceived = dateReceived
# Collect general information
self.reviewState = reviewState
contact = context.getContact()
self.contact = contact.Title() if contact else ""
self.clientOrderNumber = context.getClientOrderNumber()
self.clientReference = context.getClientReference()
self.clientSampleId = sample.getClientSampleID()
self.sampleType = sample.getSampleType().Title()
self.samplePoint = samplePoint and samplePoint.Title()
self.requestId = context.getRequestID()
self.headers = [
{'title': 'Invoice ID', 'value': self.invoiceId},
{'title': 'Client Reference',
'value': self.clientReference },
{'title': 'Sample Type', 'value': self.sampleType},
{'title': 'Request ID', 'value': self.requestId},
{'title': 'Date Received', 'value': self.dateReceived},
]
if not isAttributeHidden('AnalysisRequest', 'ClientOrderNumber'):
self.headers.append({'title': 'Client Sample Id',
'value': self.clientOrderNumber})
if not isAttributeHidden('AnalysisRequest', 'SamplePoint'):
self.headers.append(
{'title': 'Sample Point', 'value': self.samplePoint})
if self.verified:
self.headers.append(
{'title': 'Verified By', 'value': self.verifiedBy})
if self.datePublished:
self.headers.append(
{'title': 'datePublished', 'value': self.datePublished})
analyses = []
profiles = []
# Retrieve required data from analyses collection
all_analyses, all_profiles, analyses_from_profiles = context.getServicesAndProfiles()
# Relating category with solo analysis
for analysis in all_analyses:
service = analysis.getService()
categoryName = service.getCategory().Title()
# Find the category
try:
category = (
o for o in analyses if o['name'] == categoryName
).next()
except:
category = {'name': categoryName, 'analyses': []}
analyses.append(category)
# Append the analysis to the category
category['analyses'].append({
'title': analysis.Title(),
'price': analysis.getPrice(),
'priceVat': "%.2f" % analysis.getVATAmount(),
'priceTotal': "%.2f" % analysis.getTotalPrice(),
})
# Relating analysis services with their profiles
# We'll take the analysis contained on each profile
for profile in all_profiles:
# If profile's checkbox "Use Analysis Profile Price" is enabled, only the profile price will be displayed.
# Otherwise each analysis will display its own price.
pservices = []
if profile.getUseAnalysisProfilePrice():
# We have to use the profiles price only
for pservice in profile.getService():
pservices.append({
'title': pservice.Title(),
'price': None,
'priceVat': None,
'priceTotal': None,
})
profiles.append({'name': profile.title,
'price': profile.getAnalysisProfilePrice(),
'priceVat': profile.getVATAmount(),
'priceTotal': profile.getTotalPrice(),
'analyses': pservices})
else:
# We need the analyses prices instead of profile price
for pservice in profile.getService():
# We want the analysis instead of the service, because we want the price for the client
# (for instance the bulk price)
panalysis = self._getAnalysisForProfileService(pservice.getKeyword(), analyses_from_profiles)
pservices.append({
'title': pservice.Title(),
'price': panalysis.getPrice() if panalysis else pservice.getPrice(),
'priceVat': "%.2f" % panalysis.getVATAmount() if panalysis
else pservice.getVATAmount(),
'priceTotal': "%.2f" % panalysis.getTotalPrice() if panalysis
else pservice.getTotalPrice(),
})
profiles.append({'name': profile.title,
'price': None,
'priceVat': None,
'priceTotal': None,
'analyses': pservices})
self.analyses = analyses
self.profiles = profiles
# Get subtotals
self.subtotal = context.getSubtotal()
self.subtotalVATAmount = "%.2f" % context.getSubtotalVATAmount()
self.subtotalTotalPrice = "%.2f" % context.getSubtotalTotalPrice()
# Get totals
self.memberDiscount = Decimal(context.getDefaultMemberDiscount())
self.discountAmount = context.getDiscountAmount()
self.VATAmount = "%.2f" % context.getVATAmount()
self.totalPrice = "%.2f" % context.getTotalPrice()
# Render the template
return self.template()
def get_transition_date(self, obj, transition=None):
"""Returns the date of the given Transition
"""
if transition is None:
return None
return getTransitionDate(obj, transition, return_as_datetime=True)
def getDateValidated(instance):
return getTransitionDate(instance, 'validate')
def getDateStored(self):
"""Returns the date the sample was stored
"""
return wf.getTransitionDate(self, "store") or None
def getDateImported(instance):
return getTransitionDate(instance, 'import')
def __call__(self):
parms = []
titles = []
# Apply filters
self.contentFilter = {'portal_type': 'AnalysisRequest'}
val = self.selection_macros.parse_daterange(self.request,
'getDateCreated',
_('Date Created'))
if val:
self.contentFilter["created"] = val['contentFilter'][1]
parms.append(val['parms'])
titles.append(val['titles'])
# Query the catalog and store results in a dictionary
catalog = getToolByName(self.context, CATALOG_ANALYSIS_REQUEST_LISTING)
ars = catalog(self.contentFilter)
logger.info("Catalog Query '{}' returned {} results".format(
self.contentFilter, len(ars)))
if not ars:
message = _("No Samples matched your query")
self.context.plone_utils.addPortalMessage(message, "error")
return self.default_template()
datalines = {}
footlines = {}
totalcreatedcount = len(ars)
totalreceivedcount = 0
totalpublishedcount = 0
totalanlcount = 0
totalreceptionlag = 0
totalpublicationlag = 0
for ar in ars:
ar = ar.getObject()
datecreated = ar.created()
datereceived = ar.getDateReceived()
datepublished = getTransitionDate(ar, 'publish')
receptionlag = 0
publicationlag = 0
anlcount = len(ar.getAnalyses())
dataline = {
"AnalysisRequestID": ar.getId(),
"DateCreated": self.ulocalized_time(datecreated),
"DateReceived": self.ulocalized_time(datereceived),
"DatePublished": self.ulocalized_time(datepublished),
"ReceptionLag": receptionlag,
"PublicationLag": publicationlag,
"TotalLag": receptionlag + publicationlag,
"BatchID": ar.getBatch().getId() if ar.getBatch() else '',
"SampleID": ar.getId(),
"SampleType": ar.getSampleTypeTitle(),
"NumAnalyses": anlcount,
"ClientID": ar.aq_parent.id,
"Creator": ar.Creator(),
"Remarks": ar.getRemarks()
}
datalines[ar.getId()] = dataline
totalreceivedcount += ar.getDateReceived() and 1 or 0
totalpublishedcount += 1 if datepublished else 0
totalanlcount += anlcount
totalreceptionlag += receptionlag
totalpublicationlag += publicationlag
# Footer total data
totalreceivedcreated_ratio = float(totalreceivedcount) / float(
totalcreatedcount)
totalpublishedcreated_ratio = float(totalpublishedcount) / float(
totalcreatedcount)
totalpublishedreceived_ratio = totalreceivedcount and float(
totalpublishedcount) / float(totalreceivedcount) or 0
footline = {
'Created':
totalcreatedcount,
'Received':
totalreceivedcount,
'Published':
totalpublishedcount,
'ReceivedCreatedRatio':
totalreceivedcreated_ratio,
'ReceivedCreatedRatioPercentage':
('{0:.0f}'.format(totalreceivedcreated_ratio * 100)) + "%",
'PublishedCreatedRatio':
totalpublishedcreated_ratio,
'PublishedCreatedRatioPercentage':
('{0:.0f}'.format(totalpublishedcreated_ratio * 100)) + "%",
'PublishedReceivedRatio':
totalpublishedreceived_ratio,
'PublishedReceivedRatioPercentage':
('{0:.0f}'.format(totalpublishedreceived_ratio * 100)) + "%",
'AvgReceptionLag':
('{0:.1f}'.format(totalreceptionlag / totalcreatedcount)),
'AvgPublicationLag':
('{0:.1f}'.format(totalpublicationlag / totalcreatedcount)),
'AvgTotalLag': ('{0:.1f}'.format(
(totalreceptionlag + totalpublicationlag) /
totalcreatedcount)),
'NumAnalyses':
totalanlcount
}
footlines['Total'] = footline
self.report_data = {
'parameters': parms,
'datalines': datalines,
'footlines': footlines
}
if self.request.get('output_format', '') == 'CSV':
import csv
import StringIO
import datetime
fieldnames = [
"AnalysisRequestID",
"DateCreated",
"DateReceived",
"DatePublished",
"ReceptionLag",
"PublicationLag",
"TotalLag",
"BatchID",
"SampleID",
"SampleType",
"NumAnalyses",
"ClientID",
"Creator",
"Remarks",
]
output = StringIO.StringIO()
dw = csv.DictWriter(output,
extrasaction='ignore',
fieldnames=fieldnames)
dw.writerow(dict((fn, fn) for fn in fieldnames))
for ar_id, row in datalines.items():
dw.writerow({
"AnalysisRequestID": row["AnalysisRequestID"],
"DateCreated": row["DateCreated"],
"DateReceived": row["DateReceived"],
"DatePublished": row["DatePublished"],
"ReceptionLag": row["ReceptionLag"],
"PublicationLag": row["PublicationLag"],
"TotalLag": row["TotalLag"],
"BatchID": row["BatchID"],
"SampleID": row["SampleID"],
"SampleType": row["SampleType"],
"NumAnalyses": row["NumAnalyses"],
"ClientID": row["ClientID"],
"Creator": row["Creator"],
"Remarks": row["Remarks"],
})
report_data = output.getvalue()
output.close()
date = datetime.datetime.now().strftime("%Y%m%d%H%M")
setheader = self.request.RESPONSE.setHeader
setheader('Content-Type', 'text/csv')
setheader("Content-Disposition",
"attachment;filename=\"dataentrydaybook_%s.csv\"" % date)
self.request.RESPONSE.write(report_data)
else:
return {
'report_title': _('Data entry day book'),
'report_data': self.template()
}
def folderitem(self, obj, item, index):
# Additional info from AnalysisRequest to be added in the item generated
# by default by bikalisting.
# Call the folderitem method from the base class
item = BikaListingView.folderitem(self, obj, item, index)
if not item:
return None
member = self.mtool.getAuthenticatedMember()
roles = member.getRoles()
hideclientlink = 'RegulatoryInspector' in roles \
and 'Manager' not in roles \
and 'LabManager' not in roles \
and 'LabClerk' not in roles
sample = obj.getSample()
url = obj.absolute_url()
if getSecurityManager().checkPermission(EditResults, obj):
url += "/manage_results"
item['Client'] = obj.aq_parent.Title()
if (hideclientlink == False):
item['replace']['Client'] = "<a href='%s'>%s</a>" % \
(obj.aq_parent.absolute_url(), obj.aq_parent.Title())
item['Creator'] = self.user_fullname(obj.Creator())
item['getRequestID'] = obj.getRequestID()
item['replace']['getRequestID'] = "<a href='%s'>%s</a>" % \
(url, item['getRequestID'])
item['getSample'] = sample
item['replace']['getSample'] = \
"<a href='%s'>%s</a>" % (sample.absolute_url(), sample.Title())
item['replace']['getProfilesTitle'] = ", ".join(
[p.Title() for p in obj.getProfiles()])
analysesnum = obj.getAnalysesNum()
if analysesnum:
item['getAnalysesNum'] = str(analysesnum[0]) + '/' + str(analysesnum[1])
else:
item['getAnalysesNum'] = ''
batch = obj.getBatch()
if batch:
item['BatchID'] = batch.getBatchID()
item['replace']['BatchID'] = "<a href='%s'>%s</a>" % \
(batch.absolute_url(), item['BatchID'])
else:
item['BatchID'] = ''
val = obj.Schema().getField('SubGroup').get(obj)
item['SubGroup'] = val.Title() if val else ''
samplingdate = obj.getSample().getSamplingDate()
item['SamplingDate'] = self.ulocalized_time(samplingdate, long_format=1)
item['getDateReceived'] = self.ulocalized_time(obj.getDateReceived())
item['getDatePublished'] = self.ulocalized_time(obj.getDatePublished())
item['getDateVerified'] = getTransitionDate(obj, 'verify')
deviation = sample.getSamplingDeviation()
item['SamplingDeviation'] = deviation and deviation.Title() or ''
priority = obj.getPriority()
item['Priority'] = '' # priority.Title()
item['getStorageLocation'] = sample.getStorageLocation() and sample.getStorageLocation().Title() or ''
item['AdHoc'] = sample.getAdHoc() and True or ''
after_icons = ""
state = self.workflow.getInfoFor(obj, 'worksheetanalysis_review_state')
if state == 'assigned':
after_icons += "<img src='%s/++resource++bika.lims.images/worksheet.png' title='%s'/>" % \
(self.portal_url, t(_("All analyses assigned")))
if self.workflow.getInfoFor(obj, 'review_state') == 'invalid':
after_icons += "<img src='%s/++resource++bika.lims.images/delete.png' title='%s'/>" % \
(self.portal_url, t(_("Results have been withdrawn")))
if obj.getLate():
after_icons += "<img src='%s/++resource++bika.lims.images/late.png' title='%s'>" % \
(self.portal_url, t(_("Late Analyses")))
if samplingdate > DateTime():
after_icons += "<img src='%s/++resource++bika.lims.images/calendar.png' title='%s'>" % \
(self.portal_url, t(_("Future dated sample")))
if obj.getInvoiceExclude():
after_icons += "<img src='%s/++resource++bika.lims.images/invoice_exclude.png' title='%s'>" % \
(self.portal_url, t(_("Exclude from invoice")))
if sample.getSampleType().getHazardous():
after_icons += "<img src='%s/++resource++bika.lims.images/hazardous.png' title='%s'>" % \
(self.portal_url, t(_("Hazardous")))
if after_icons:
item['after']['getRequestID'] = after_icons
item['Created'] = self.ulocalized_time(obj.created())
contact = obj.getContact()
if contact:
item['ClientContact'] = contact.Title()
item['replace']['ClientContact'] = "<a href='%s'>%s</a>" % \
(contact.absolute_url(), contact.Title())
else:
item['ClientContact'] = ""
SamplingWorkflowEnabled = sample.getSamplingWorkflowEnabled()
if SamplingWorkflowEnabled and not samplingdate > DateTime():
datesampled = self.ulocalized_time(sample.getDateSampled())
if not datesampled:
datesampled = self.ulocalized_time(
DateTime(),
long_format=1)
item['class']['getDateSampled'] = 'provisional'
sampler = sample.getSampler().strip()
if sampler:
item['replace']['getSampler'] = self.user_fullname(sampler)
if 'Sampler' in member.getRoles() and not sampler:
sampler = member.id
item['class']['getSampler'] = 'provisional'
else:
datesampled = ''
sampler = ''
item['getDateSampled'] = datesampled
item['getSampler'] = sampler
# sampling workflow - inline edits for Sampler and Date Sampled
checkPermission = self.context.portal_membership.checkPermission
state = self.workflow.getInfoFor(obj, 'review_state')
if state == 'to_be_sampled' \
and checkPermission(SampleSample, obj) \
and not samplingdate > DateTime():
item['required'] = ['getSampler', 'getDateSampled']
item['allow_edit'] = ['getSampler', 'getDateSampled']
samplers = getUsers(sample, ['Sampler', 'LabManager', 'Manager'])
username = member.getUserName()
users = [({'ResultValue': u, 'ResultText': samplers.getValue(u)})
for u in samplers]
item['choices'] = {'getSampler': users}
Sampler = sampler and sampler or \
(username in samplers.keys() and username) or ''
item['getSampler'] = Sampler
# These don't exist on ARs
# XXX This should be a list of preservers...
item['getPreserver'] = ''
item['getDatePreserved'] = ''
# inline edits for Preserver and Date Preserved
checkPermission = self.context.portal_membership.checkPermission
if checkPermission(PreserveSample, obj):
item['required'] = ['getPreserver', 'getDatePreserved']
item['allow_edit'] = ['getPreserver', 'getDatePreserved']
preservers = getUsers(obj, ['Preserver', 'LabManager', 'Manager'])
username = member.getUserName()
users = [({'ResultValue': u, 'ResultText': preservers.getValue(u)})
for u in preservers]
item['choices'] = {'getPreserver': users}
preserver = username in preservers.keys() and username or ''
item['getPreserver'] = preserver
item['getDatePreserved'] = self.ulocalized_time(
DateTime(),
long_format=1)
item['class']['getPreserver'] = 'provisional'
item['class']['getDatePreserved'] = 'provisional'
# Submitting user may not verify results
if item['review_state'] == 'to_be_verified' and \
not checkPermission(VerifyOwnResults, obj):
self_submitted = False
try:
review_history = list(self.workflow.getInfoFor(obj, 'review_history'))
review_history.reverse()
for event in review_history:
if event.get('action') == 'submit':
if event.get('actor') == member.getId():
self_submitted = True
break
if self_submitted:
item['after']['state_title'] = \
"<img src='++resource++bika.lims.images/submitted-by-current-user.png' title='%s'/>" % \
t(_("Cannot verify: Submitted by current user"))
except Exception:
pass
return item
