def test_countingsort_scrambled(self):
mock_1 = mock.Mock(cnt=1)
mock_2 = mock.Mock(cnt=2)
mock_3 = mock.Mock(cnt=3)
actual_list = [mock_1, mock_3, mock_2]
expected_list = [mock_1, mock_2, mock_3]
radix.RadixSort()._counting_sort(actual_list, 1)
self.assertEqual(actual_list, expected_list)
def main():
if len(sys.argv) != 3:
print("Usage: fasta_percentage <fasta_file> <output_file>")
fasta_filepath = sys.argv[1]
output_filepath = sys.argv[2]
seq_dict, max_val = build_sequence_dict(fasta_filepath)
seq_list = convert_to_list(seq_dict)
radix.RadixSort().sort(seq_list, max_val)
write_to_file(seq_list, output_filepath)
def test_countingsort_empty_no_failure(self):
actual_list = []
radix.RadixSort()._counting_sort(actual_list, 1)
self.assertEqual(actual_list, [])
def test_sort_max_is_thousands(self):
with patch.object(radix.RadixSort, '_counting_sort') as mock_sort:
radix.RadixSort().sort([], 1000)
self.assertEqual(mock_sort.call_count, 4)