def test_missing_monomer_condition():
stmts = [Activation(Agent('BRAF'), Agent('KRAS'))]
model = tra_module.assemble_model(stmts)
entity = Agent('HRAS')
quantity = tra.MolecularQuantityReference('total', entity)
condition = tra.MolecularCondition('multiple', quantity, 10)
tra.apply_condition(model, condition)
def get_molecular_condition(lst: KQMLList) -> tra.MolecularCondition:
try:
condition_type = lst.gets('type')
quantity_ref_lst = lst.get('quantity')
quantity = get_molecular_quantity_ref(quantity_ref_lst)
if condition_type == 'exact':
value = get_molecular_quantity(lst.get('value'))
elif condition_type == 'multiple':
value = lst.gets('value')
else:
value = None
return tra.MolecularCondition(condition_type, quantity, value)
except Exception as e:
raise tra.InvalidMolecularConditionError(e)