def _check_nuclotide_seqs(self, seq_files):
"""Check if files contain sequences in nucleotide space.
Parameters
----------
seq_files : iterable
Sequence files to check.
Returns
-------
boolean
True if files can be treated as containing nucleotide sequences.
"""
for seq_file in seq_files:
if os.stat(seq_file).st_size == 0:
continue
if not seq_io.is_nucleotide(seq_file):
print(
'Expected all files to contain sequences in nucleotide space.'
)
print(
'File %s appears like it may contain amino acids sequences.'
% seq_file)
yes_response = query_yes_no(
'Do all files contain only nucleotide sequences?',
default='no')
if not yes_response:
return False
return True
def _check_nuclotide_seqs(self, seq_files):
"""Check if files contain sequences in nucleotide space.
Parameters
----------
seq_files : iterable
Sequence files to check.
Returns
-------
boolean
True if files can be treated as containing nucleotide sequences.
"""
for seq_file in seq_files:
if not seq_io.is_nucleotide(seq_file):
print('Expected all files to contain sequences in nucleotide space.')
print('File %s appears like it may contain amino acids sequences.' % seq_file)
yes_response = query_yes_no('Do all files contain only nucleotide sequences?', default='no')
if not yes_response:
return False
return True