def save(self):
assert(self.root_dir)
# create root dir, if not there yet
if not(os.path.exists(self.root_dir)):
os.makedirs(self.root_dir)
# save protein ids, if available already
if(self.proteins):
# write protein ids to file
file_io.write_ids(self.protein_ids_f(), self.get_protein_ids())
# write mutation data to file, if any
muts = [m.tuple_representation() for m in self.get_mutations()]
if(muts):
file_io.write_mutation(self.mutation_f(), muts)
# save the data sources
for ds in self.data_sources:
ds.save()
def save(self):
assert (self.root_dir)
# create root dir, if not there yet
if not (os.path.exists(self.root_dir)):
os.makedirs(self.root_dir)
# save protein ids, if available already
if (self.proteins):
# write protein ids to file
file_io.write_ids(self.protein_ids_f(), self.get_protein_ids())
# write mutation data to file, if any
muts = [m.tuple_representation() for m in self.get_mutations()]
if (muts):
file_io.write_mutation(self.mutation_f(), muts)
# save the data sources
for ds in self.data_sources:
ds.save()
def _save_feature_ids(self, f):
if not(self.feature_ids is None):
with open(f, 'w') as fout:
file_io.write_ids(fout, self.feature_ids)
elif(os.path.exists(f)):
os.remove(f)
def _save_object_ids(self, f):
if(self.object_ids):
with open(f, 'w') as fout:
file_io.write_ids(fout, self.object_ids)
def _save_feature_ids(self, f):
if not (self.feature_ids is None):
with open(f, 'w') as fout:
file_io.write_ids(fout, self.feature_ids)
elif (os.path.exists(f)):
os.remove(f)
def _save_object_ids(self, f):
if (self.object_ids):
with open(f, 'w') as fout:
file_io.write_ids(fout, self.object_ids)