def get_biothings(api, id, fields=None, fields_uri=None):
if fields:
doc = ClientRedirect().annotate(id, api, fields=fields)
return doc
elif fields_uri:
field_name_list = uri_to_field_name(fields_uri, api)
field_name = ",".join(field_name_list)
doc = ClientRedirect().annotate(id, api, fields=field_name)
return doc
else:
doc = ClientRedirect().annotate(id, api)
return doc
def query_ids_from_output_type(api, _type, _value, input_relation=None):
uri = AVAILABLE_IDS[_type]["uri"]
query_info = compose_query_parameter_from_uri(uri, _value, api,
input_relation)
print(query_info)
id_list = ClientRedirect().get_id_list(api, query_info, fetch_all=True)
return id_list
def find_query_id_list(api, type, value):
_uri = AVAILABLE_IDS[type]["uri"]
query_parameters = compose_query_parameter_from_uri(_uri, value, api)
ids = ClientRedirect().get_id_list(api, query_parameters)
_url = AVAILABLE_API_SOURCES[api]["query_syntax"].replace(
"*", query_parameters)
results = {
'type': AVAILABLE_API_SOURCES[api]['annotate_ids'][0],
'ids': ids,
'url': _url
}
return results
def query_biothings(api,
fields=None,
fields_uri=None,
fields_value=None,
return_fields=None,
return_fields_uri=None,
fetch_all=True):
if return_fields_uri:
field_name_list = uri_to_field_name(return_fields_uri, api)
return_fields = ",".join(field_name_list)
if fields:
query_info = fields + ': ' + fields_value
elif fields_uri:
query_field_name_list = uri_to_field_name(fields_uri, api)
query_info = compose_query_parameter_from_uri(fields_uri, fields_value,
api)
return ClientRedirect().query(api,
query_info,
fields=return_fields,
fetch_all=fetch_all)