def test_model_load():
model_path = "examples/pyomecaman.s2mMod"
# From path
b1 = Viz(model_path=model_path, show_muscles=False, show_meshes=False)
# From a loaded model
m = biorbd.s2mMusculoSkeletalModel(model_path)
b1 = Viz(loaded_model=m, show_muscles=False, show_meshes=False)
def test_model_load():
model_path = "examples/pyomecaman.bioMod"
# From path
b1 = Viz(model_path=model_path)
# From a loaded model
m = biorbd.Model(model_path)
b2 = Viz(loaded_model=m)
# """
# Example script for animating a model
# """
import numpy as np
from bioviz import Viz
b = Viz(model_path="pyomecaman.bioMod")
animate_by_hand = 0
if animate_by_hand == 0:
n_frames = 200
all_q = np.zeros((b.nQ, n_frames))
all_q[4, :] = np.linspace(0, np.pi / 2, n_frames)
b.load_movement(all_q)
b.exec()
elif animate_by_hand == 1:
n_frames = 200
Q = np.zeros((b.nQ, n_frames))
Q[4, :] = np.linspace(0, np.pi / 2, n_frames)
i = 0
while b.vtk_window.is_active:
b.set_q(Q[:, i])
i = (i + 1) % n_frames
else:
b.exec()
import time
import pickle
import sys
from bioviz import Viz
file_path = 0
if len(sys.argv) > 1:
file_path = str(sys.argv[1])
if not isinstance(file_path, str):
t = time.localtime(time.time())
file_path = f"results/{t.tm_year}_{t.tm_mon}_{t.tm_mday}_upDown.bob"
with open(file_path, "rb") as file:
data = pickle.load(file)
data_interpolate, _ = data["data"]
b = Viz("../models/BrasViolon.bioMod",
markers_size=0.0002,
show_segments_center_of_mass=False,
show_local_ref_frame=False,
show_global_ref_frame=False,
show_muscles=False)
b.load_movement(data_interpolate["q"].T, )
b.exec()
for j in range(m.muscleGroup(i).nbMuscles()):
plt.subplot(3, 6, cmp + 1)
utils.plot_piecewise_constant(t_final, all_u[cmp, :])
plt.title(m.muscleGroup(i).muscle(j).name().to_string())
plt.ylim((0, 1))
cmp += 1
else:
nb_row = np.max(muscle_plot_mapping, axis=0)[3] + 1
nb_col = np.max(muscle_plot_mapping, axis=0)[4] + 1
created_axes = [None] * nb_col * nb_row
for muscle_map in muscle_plot_mapping:
idx_axis = muscle_map[3] * nb_col + muscle_map[4]
if created_axes[idx_axis]:
plt.sca(created_axes[idx_axis])
else:
created_axes[idx_axis] = plt.subplot(nb_row, nb_col,
idx_axis + 1)
utils.plot_piecewise_constant(t_final, all_u[muscle_map[0], :])
# plt.title(m.muscleGroup(map[1]).muscle(map[2]).name().getString())
plt.title(muscle_plot_names[muscle_map[5]])
plt.ylim((0, 1))
plt.tight_layout(w_pad=-1.0, h_pad=-1.0)
plt.show()
# Animate the model
b = Viz(loaded_model=m, markers_size=0.003)
# b = Viz(loaded_model=m)
b.load_movement(q_interp)
b.exec()
from bioviz import Viz b = Viz(model_path="arm_wt_rot_scap.bioMod") b.vtk_window.change_background_color((1, 1, 1)) b.exec()
t_span=(0, 1),
y0=q_init,
method='RK45',
atol=1e-8,
rtol=1e-6)
t_interp2, q_interp2 = utils.interpolate_integration(nb_frames=1000,
t_int=integrated_tp2.t,
y_int=integrated_tp2.y)
from matplotlib import pyplot as plt
plt.plot(t_interp, q_interp)
plt.plot(t_interp2, q_interp2, '-.')
plt.show()
bioviz = Viz(loaded_model=biorbd_model)
bioviz2 = Viz(loaded_model=biorbd_model)
bioviz.load_movement(q_interp)
bioviz2.load_movement(q_interp2)
bioviz.is_executing = True
bioviz2.is_executing = True
while bioviz.vtk_window.is_active and bioviz2.vtk_window.is_active:
if bioviz.show_options and bioviz.is_animating:
bioviz.movement_slider[0].setValue(
(bioviz.movement_slider[0].value() + 1) %
bioviz.movement_slider[0].maximum())
if bioviz2.show_options and bioviz2.is_animating:
bioviz2.movement_slider[0].setValue(
(bioviz2.movement_slider[0].value() + 1) %
bioviz2.movement_slider[0].maximum())