def build_model(args):
x = tensor.tensor3('features', dtype=floatX)
y = tensor.tensor3('targets', dtype=floatX)
linear = Linear(input_dim=1, output_dim=4 * args.units)
rnn = LSTM(dim=args.units, activation=Tanh())
linear2 = Linear(input_dim=args.units, output_dim=1)
prediction = Tanh().apply(linear2.apply(rnn.apply(linear.apply(x))))
prediction = prediction[:-1, :, :]
# SquaredError does not work on 3D tensor
y = y.reshape((y.shape[0] * y.shape[1], y.shape[2]))
prediction = prediction.reshape((prediction.shape[0] * prediction.shape[1],
prediction.shape[2]))
cost = SquaredError().apply(y, prediction)
# Initialization
linear.weights_init = IsotropicGaussian(0.1)
linear2.weights_init = IsotropicGaussian(0.1)
linear.biases_init = Constant(0)
linear2.biases_init = Constant(0)
rnn.weights_init = Orthogonal()
return cost
def get_presoft(h, args):
output_size = get_output_size(args.dataset)
# If args.skip_connections: dim = args.layers * args.state_dim
# else: dim = args.state_dim
use_all_states = args.skip_connections or args.skip_output or (args.rnn_type in ["clockwork", "soft"])
output_layer = Linear(
input_dim=use_all_states * args.layers *
args.state_dim + (1 - use_all_states) * args.state_dim,
output_dim=output_size, name="output_layer")
output_layer.weights_init = initialization.IsotropicGaussian(0.1)
output_layer.biases_init = initialization.Constant(0)
output_layer.initialize()
presoft = output_layer.apply(h)
if not has_indices(args.dataset):
presoft = Tanh().apply(presoft)
presoft.name = 'presoft'
return presoft
def __init__(self, dim, activation=None, gate_activation=None, **kwargs):
self.dim = dim
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Logistic()
self.activation = activation
self.gate_activation = gate_activation
children = [activation, gate_activation]
kwargs.setdefault('children', []).extend(children)
super(ZoneoutGRU, self).__init__(**kwargs)
def getBidir(input_dim,input_var):
"""SimpleRecurrent-based bidirectionnal"""
bidir = Bidirectional(weights_init=Orthogonal(),
prototype=SimpleRecurrent(
dim=input_dim, activation=Tanh()))
#bidir.allocate()
bidir.initialize()
h = bidir.apply(input_var)
net = add_softmax_layer(h, input_dim, 2)
return net
def __init__(self, enc_transition, dims, dim_input, subsample, **kwargs):
super(Encoder, self).__init__(**kwargs)
self.subsample = subsample
for layer_num, (dim_under, dim) in enumerate(
zip([dim_input] + list(2 * numpy.array(dims)), dims)):
bidir = Bidirectional(RecurrentWithFork(enc_transition(
dim=dim, activation=Tanh()).apply,
dim_under,
name='with_fork'),
name='bidir{}'.format(layer_num))
self.children.append(bidir)
def __init__(self, dim, activation=None, gate_activation=None, **kwargs):
super(GatedRecurrent, self).__init__(**kwargs)
self.dim = dim
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Sigmoid()
self.activation = activation
self.gate_activation = gate_activation
self.children = [activation, gate_activation]
def __init__(self, dim, activation=None, mlp=None, **kwargs):
super(SoftGatedRecurrent, self).__init__(**kwargs)
self.dim = dim
if not activation:
activation = Tanh()
self.activation = activation
# The activation of the mlp should be a Logistic function
self.mlp = mlp
self.children = [activation, mlp]
def __init__(self, dim, activation=None, gate_activation=None, **kwargs):
self.dim = dim
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Logistic()
self.activation = activation
self.gate_activation = gate_activation
children = [activation, gate_activation] + kwargs.get('children', [])
super(GatedRecurrent, self).__init__(children=children, **kwargs)
def __init__(self, dim, activation=None, gate_activation=None, **kwargs):
super(LSTMGraves, self).__init__(**kwargs)
self.dim = dim
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Logistic()
self.activation = activation
self.gate_activation = gate_activation
self.children = [activation, gate_activation]
def __init__(self, dimension, alphabet_size, **kwargs):
super(WordReverser, self).__init__(**kwargs)
encoder = Bidirectional(
SimpleRecurrent(dim=dimension, activation=Tanh()))
fork = Fork([
name for name in encoder.prototype.apply.sequences
if name != 'mask'
])
fork.input_dim = dimension
fork.output_dims = [
encoder.prototype.get_dim(name) for name in fork.input_names
]
lookup = LookupTable(alphabet_size, dimension)
transition = SimpleRecurrent(activation=Tanh(),
dim=dimension,
name="transition")
attention = SequenceContentAttention(
state_names=transition.apply.states,
attended_dim=2 * dimension,
match_dim=dimension,
name="attention")
readout = Readout(readout_dim=alphabet_size,
source_names=[
transition.apply.states[0],
attention.take_glimpses.outputs[0]
],
emitter=SoftmaxEmitter(name="emitter"),
feedback_brick=LookupFeedback(
alphabet_size, dimension),
name="readout")
generator = SequenceGenerator(readout=readout,
transition=transition,
attention=attention,
name="generator")
self.lookup = lookup
self.fork = fork
self.encoder = encoder
self.generator = generator
self.children = [lookup, fork, encoder, generator]
def __init__(self, vocab_size, topical_embedding_dim, state_dim,word_num,batch_size,
**kwargs):
super(topicalq_transformer, self).__init__(**kwargs)
self.vocab_size = vocab_size;
self.word_embedding_dim = topical_embedding_dim;
self.state_dim = state_dim;
self.word_num=word_num;
self.batch_size=batch_size;
self.look_up=LookupTable(name='topical_embeddings');
self.transformer=MLP(activations=[Tanh()],
dims=[self.word_embedding_dim*self.word_num, self.state_dim],
name='topical_transformer');
self.children = [self.look_up,self.transformer];
def __init__(self,
dim,
attended_dim,
activation=None,
gate_activation=None,
**kwargs):
super(GRU, self).__init__(**kwargs)
self.dim = dim
self.attended_dim = attended_dim
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Logistic()
self.activation = activation
self.gate_activation = gate_activation
self.initial_transformer = MLP(activations=[Tanh()],
dims=[attended_dim, self.dim],
name='state_initializer')
self.children = [activation, gate_activation, self.initial_transformer]
def test_highway_activation():
x = T.matrix()
highway = Highway(input_dim=100,
output_activation=Tanh(),
transform_activation=Identity())
highway.biases_init = Constant(0.0)
highway.weights_init = init_Identity()
y = highway.apply(x)
highway.initialize()
_func = theano.function([x], y)
x_val = np.ones((4, 100), dtype=theano.config.floatX)
ret = _func(x_val)
assert_allclose(ret, np.tanh(np.ones((4, 100))))
def __init__(self, attended_dim, context_dim, **kwargs):
super(GRUInitialStateWithInitialStateSumContext,
self).__init__(**kwargs)
self.attended_dim = attended_dim
self.context_dim = context_dim
# two MLPs which map to the same dimension, then we sum
# the motivation here is to allow the network to pretrain on the normal MT, task,
# then keep some params static, and continue training with the context-enhanced task
# the state transformer
self.initial_transformer = MLP(activations=[Tanh()],
dims=[attended_dim, self.dim],
name='state_initializer')
# the context transformer
self.context_transformer = MLP(
activations=[Tanh(), Tanh(), Tanh()],
dims=[context_dim, 2000, 1000, self.dim],
name='context_initializer')
self.children.extend(
[self.initial_transformer, self.context_transformer])
def test_convolutional_sequence_with_convolutions_raw_activation():
seq = ConvolutionalSequence(
[Convolutional(filter_size=(3, 3), num_filters=4),
Rectifier(),
Convolutional(filter_size=(5, 5), num_filters=3, step=(2, 2)),
Tanh()],
num_channels=2,
image_size=(21, 39))
seq.allocate()
x = theano.tensor.tensor4()
out = seq.apply(x).eval({x: numpy.ones((10, 2, 21, 39),
dtype=theano.config.floatX)})
assert out.shape == (10, 3, 8, 17)
def main(save_to, num_epochs):
mlp = MLP([Tanh(), Softmax()], [784, 100, 10],
weights_init=IsotropicGaussian(0.01),
biases_init=Constant(0))
mlp.initialize()
x = tensor.matrix('features')
y = tensor.lmatrix('targets')
probs = mlp.apply(x)
cost = CategoricalCrossEntropy().apply(y.flatten(), probs)
error_rate = MisclassificationRate().apply(y.flatten(), probs)
cg = ComputationGraph([cost])
W1, W2 = VariableFilter(roles=[WEIGHT])(cg.variables)
cost = cost + .00005 * (W1**2).sum() + .00005 * (W2**2).sum()
cost.name = 'final_cost'
mnist_train = MNIST("train")
mnist_test = MNIST("test")
algorithm = GradientDescent(cost=cost,
params=cg.parameters,
step_rule=Scale(learning_rate=0.1))
main_loop = MainLoop(
algorithm,
DataStream(mnist_train,
iteration_scheme=SequentialScheme(mnist_train.num_examples,
50)),
model=Model(cost),
extensions=[
Timing(),
FinishAfter(after_n_epochs=num_epochs),
DataStreamMonitoring([cost, error_rate],
DataStream(mnist_test,
iteration_scheme=SequentialScheme(
mnist_test.num_examples, 500)),
prefix="test"),
TrainingDataMonitoring([
cost, error_rate,
aggregation.mean(algorithm.total_gradient_norm)
],
prefix="train",
after_epoch=True),
Checkpoint(save_to),
Plot('MNIST example',
channels=[[
'test_final_cost',
'test_misclassificationrate_apply_error_rate'
], ['train_total_gradient_norm']]),
Printing()
])
main_loop.run()
def test_activations():
x = tensor.vector()
x_val = numpy.random.rand(8).astype(theano.config.floatX)
exp_x_val = numpy.exp(x_val)
assert_allclose(x_val, Identity().apply(x).eval({x: x_val}))
assert_allclose(numpy.tanh(x_val), Tanh().apply(x).eval({x: x_val}),
rtol=1e-06)
assert_allclose(numpy.log(1 + exp_x_val),
Softplus(x).apply(x).eval({x: x_val}), rtol=1e-6)
assert_allclose(exp_x_val / numpy.sum(exp_x_val),
Softmax(x).apply(x).eval({x: x_val}).flatten(), rtol=1e-6)
assert_allclose(1.0 / (1.0 + numpy.exp(-x_val)),
Logistic(x).apply(x).eval({x: x_val}), rtol=1e-6)
def __init__(self,
vocab_size,
embedding_dim,
igru_state_dim,
igru_depth,
trg_dgru_depth,
emitter=None,
feedback_brick=None,
merge=None,
merge_prototype=None,
post_merge=None,
merged_dim=None,
igru=None,
**kwargs):
# for compatible
if igru_depth == 1:
self.igru = IGRU(dim=igru_state_dim)
else:
self.igru = RecurrentStack(
[IGRU(dim=igru_state_dim, name='igru')] + [
UpperIGRU(dim=igru_state_dim,
activation=Tanh(),
name='upper_igru' + str(i))
for i in range(1, igru_depth)
],
skip_connections=True)
self.igru_depth = igru_depth
self.trg_dgru_depth = trg_dgru_depth
self.lookup = LookupTable(name='embeddings')
self.vocab_size = vocab_size
self.igru_state_dim = igru_state_dim
self.gru_to_softmax = Linear(input_dim=igru_state_dim,
output_dim=vocab_size)
self.embedding_dim = embedding_dim
self.gru_fork = Fork([
name for name in self.igru.apply.sequences
if name != 'mask' and name != 'input_states'
],
prototype=Linear(),
name='gru_fork')
kwargs['children'] = [
self.igru, self.lookup, self.gru_to_softmax, self.gru_fork
]
super(Interpolator, self).__init__(emitter=emitter,
feedback_brick=feedback_brick,
merge=merge,
merge_prototype=merge_prototype,
post_merge=post_merge,
merged_dim=merged_dim,
**kwargs)
def __init__(self, dimension, input_size, embed_input=False, **kwargs):
super(LSTMEncoder, self).__init__(**kwargs)
if embed_input:
self.embedder = LookupTable(input_size, dimension)
else:
self.embedder = Linear(input_size, dimension)
self.fork = Fork(['inputs'],
dimension,
output_dims=[dimension],
prototype=Linear(dimension, 4 * dimension))
encoder = Bidirectional(LSTM(dim=dimension, activation=Tanh()))
self.encoder = encoder
self.children = [encoder, self.embedder, self.fork]
def example4():
"""LSTM -> Plante lors de l'initialisation du lstm."""
x = tensor.tensor3('x')
dim = 3
# gate_inputs = theano.function([x],x*4)
gate_inputs = Linear(input_dim=dim,
output_dim=dim * 4,
name="linear",
weights_init=initialization.Identity(),
biases_init=Constant(2))
lstm = LSTM(dim=dim,
activation=Tanh(),
weights_init=IsotropicGaussian(),
biases_init=Constant(0))
gate_inputs.initialize()
hg = gate_inputs.apply(x)
#print(gate_inputs.parameters)
#print(gate_inputs.parameters[1].get_value())
lstm.initialize()
h, cells = lstm.apply(hg)
print(lstm.parameters)
f = theano.function([x], h)
print(f(np.ones((dim, 1, dim), dtype=theano.config.floatX)))
print(f(np.ones((dim, 1, dim), dtype=theano.config.floatX)))
print(f(4 * np.ones((dim, 1, dim), dtype=theano.config.floatX)))
print("Good Job!")
# lstm_output =
#Initial State
h0 = tensor.matrix('h0')
c = tensor.matrix('cells')
h, c1 = lstm.apply(
inputs=x, states=h0,
cells=c) # lstm.apply(states=h0,cells=cells,inputs=gate_inputs)
f = theano.function([x, h0, c], h)
print("a")
print(
f(np.ones((3, 1, 3), dtype=theano.config.floatX),
np.ones((1, 3), dtype=theano.config.floatX),
np.ones((1, 3), dtype=theano.config.floatX)))
def __init__(self, vocab_size, embedding_dim, n_layers, skip_connections,
state_dim, **kwargs):
"""Sole constructor.
Args:
vocab_size (int): Source vocabulary size
embedding_dim (int): Dimension of the embedding layer
n_layers (int): Number of layers. Layers share the same
weight matrices.
skip_connections (bool): Skip connections connect the
source word embeddings directly
with deeper layers to propagate
the gradient more efficiently
state_dim (int): Number of hidden units in the recurrent
layers.
"""
super(DeepBidirectionalEncoder, self).__init__(**kwargs)
self.vocab_size = vocab_size
self.embedding_dim = embedding_dim
self.n_layers = n_layers
self.state_dim = state_dim
self.skip_connections = skip_connections
self.lookup = LookupTable(name='embeddings')
self.bidirs = []
self.fwd_forks = []
self.back_forks = []
for i in xrange(self.n_layers):
bidir = BidirectionalWMT15(GatedRecurrent(activation=Tanh(),
dim=state_dim),
name='bidir%d' % i)
self.bidirs.append(bidir)
self.fwd_forks.append(
Fork([
name for name in bidir.prototype.apply.sequences
if name != 'mask'
],
prototype=Linear(),
name='fwd_fork%d' % i))
self.back_forks.append(
Fork([
name for name in bidir.prototype.apply.sequences
if name != 'mask'
],
prototype=Linear(),
name='back_fork%d' % i))
self.children = [self.lookup] \
+ self.bidirs \
+ self.fwd_forks \
+ self.back_forks
def create_rnn(hidden_dim, vocab_dim, mode="rnn"):
# input
x = tensor.imatrix('inchar')
y = tensor.imatrix('outchar')
#
W = LookupTable(
name="W1",
#dim = hidden_dim*4,
dim=hidden_dim,
length=vocab_dim,
weights_init=initialization.IsotropicGaussian(0.01),
biases_init=initialization.Constant(0))
if mode == "lstm":
# Long Short Term Memory
H = LSTM(hidden_dim,
name='H',
weights_init=initialization.IsotropicGaussian(0.01),
biases_init=initialization.Constant(0.0))
else:
# recurrent history weight
H = SimpleRecurrent(
name="H",
dim=hidden_dim,
activation=Tanh(),
weights_init=initialization.IsotropicGaussian(0.01))
#
S = Linear(name="W2",
input_dim=hidden_dim,
output_dim=vocab_dim,
weights_init=initialization.IsotropicGaussian(0.01),
biases_init=initialization.Constant(0))
A = NDimensionalSoftmax(name="softmax")
initLayers([W, H, S])
activations = W.apply(x)
hiddens = H.apply(activations) #[0]
activations2 = S.apply(hiddens)
y_hat = A.apply(activations2, extra_ndim=1)
cost = A.categorical_cross_entropy(y, activations2, extra_ndim=1).mean()
cg = ComputationGraph(cost)
#print VariableFilter(roles=[WEIGHT])(cg.variables)
#W1,H,W2 = VariableFilter(roles=[WEIGHT])(cg.variables)
layers = (x, W, H, S, A, y)
return cg, layers, y_hat, cost
def __init__(self, vocab_size, embedding_dim, state_dim,
representation_dim, **kwargs):
super(Decoder, self).__init__(**kwargs)
self.vocab_size = vocab_size
self.embedding_dim = embedding_dim
self.state_dim = state_dim
self.representation_dim = representation_dim
self.transition = GRUInitialState(attended_dim=state_dim,
dim=state_dim,
activation=Tanh(),
name='decoder')
self.attention = SequenceContentAttention(
state_names=self.transition.apply.states,
attended_dim=representation_dim,
match_dim=state_dim,
name="attention")
readout = Readout(source_names=[
'states', 'feedback', self.attention.take_glimpses.outputs[0]
],
readout_dim=self.vocab_size,
emitter=SoftmaxEmitter(initial_output=-1),
feedback_brick=LookupFeedbackWMT15(
vocab_size, embedding_dim),
post_merge=InitializableFeedforwardSequence([
Bias(dim=state_dim, name='maxout_bias').apply,
Maxout(num_pieces=2, name='maxout').apply,
Linear(input_dim=state_dim / 2,
output_dim=embedding_dim,
use_bias=False,
name='softmax0').apply,
Linear(input_dim=embedding_dim,
name='softmax1').apply
]),
merged_dim=state_dim,
merge_prototype=Linear(use_bias=True))
self.sequence_generator = SequenceGenerator(
readout=readout,
transition=self.transition,
attention=self.attention,
fork=Fork([
name
for name in self.transition.apply.sequences if name != 'mask'
],
prototype=Linear()))
self.children = [self.sequence_generator]
def __init__(self, dim, activation=None, gate_activation=None, **kwargs):
super(GatedRecurrent, self).__init__(**kwargs)
self.dim = dim
self.recurrent_weights_init = None
self.initial_states_init = None
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Logistic()
self.activation = activation
self.gate_activation = gate_activation
self.children = [activation, gate_activation]
def __init__(self, feature_size, embedding_dim, state_dim, **kwargs):
super(BidirectionalAudioEncoder, self).__init__(**kwargs)
self.feature_size = feature_size
self.embedding_dim = embedding_dim
self.state_dim = state_dim
self.embedding = BidirectionalWMT15(GatedRecurrent(activation=Tanh(), dim=state_dim), name="audio_embeddings")
self.embedding_fwd_fork = Fork(
[name for name in self.embedding.prototype.apply.sequences
if name != 'mask'], prototype=Linear(), name='embedding_fwd_fork')
self.embedding_back_fork = Fork(
[name for name in self.embedding.prototype.apply.sequences
if name != 'mask'], prototype=Linear(), name='embedding_back_fork')
self.bidir = BidirectionalWMT15(GatedRecurrent(activation=Tanh(), dim=state_dim), name="audio_representation")
self.fwd_fork = Fork(
[name for name in self.bidir.prototype.apply.sequences
if name != 'mask'], prototype=Linear(), name='fwd_fork')
self.back_fork = Fork(
[name for name in self.bidir.prototype.apply.sequences
if name != 'mask'], prototype=Linear(), name='back_fork')
self.children = [self.bidir, self.embedding,
self.fwd_fork, self.back_fork, self.embedding_fwd_fork, self.embedding_back_fork]
def apply_fc(x, fc_layers, fc_ws, fc_bs):
out = x
for layer in fc_layers:
name, shape, act = layer
w = {w.name: w for w in fc_ws}[name + '_w']
b = {b.name: b for b in fc_bs}[name + '_b']
if act == 'relu':
act = Rectifier().apply
elif act == 'tanh':
act = Tanh().apply
elif act == 'lin':
act = lambda n: n
out = tensor.dot(out, w)
out = act(out + b)
return out
def __init__(self, dim, activation=None, mlp=None, **kwargs):
super(HardGatedRecurrent, self).__init__(**kwargs)
self.dim = dim
if not activation:
activation = Tanh()
self.activation = activation
# The activation of the mlp should be a Logistic function
self.mlp = mlp
# The random stream
self.randomstream = MRG_RandomStreams()
self.children = [activation, mlp]
def __init__(self, dim, activation=None, gate_activation=None,
model_type=6, ogates_zoneout=False, **kwargs):
self.dim = dim
self.model_type = model_type
self.ogates_zoneout = ogates_zoneout
if not activation:
activation = Tanh()
if not gate_activation:
gate_activation = Logistic()
self.activation = activation
self.gate_activation = gate_activation
children = [self.activation, self.gate_activation]
kwargs.setdefault('children', []).extend(children)
super(ZoneoutLSTM, self).__init__(**kwargs)
def __init__(self, enc_transition, dims, dim_input, subsample, bidir,
**kwargs):
super(Encoder, self).__init__(**kwargs)
self.subsample = subsample
dims_under = [dim_input] + list(
(2 if bidir else 1) * numpy.array(dims))
for layer_num, (dim_under, dim) in enumerate(zip(dims_under, dims)):
layer = RecurrentWithFork(enc_transition(dim=dim,
activation=Tanh()).apply,
dim_under,
name='with_fork{}'.format(layer_num))
if bidir:
layer = Bidirectional(layer, name='bidir{}'.format(layer_num))
self.children.append(layer)
self.dim_encoded = (2 if bidir else 1) * dims[-1]
def test_super_in_recurrent_overrider():
# A regression test for the issue #475
class SimpleRecurrentWithContext(SimpleRecurrent):
@application(contexts=['context'])
def apply(self, context, *args, **kwargs):
kwargs['inputs'] += context
return super(SimpleRecurrentWithContext, self).apply(*args,
**kwargs)
@apply.delegate
def apply_delegate(self):
return super(SimpleRecurrentWithContext, self).apply
brick = SimpleRecurrentWithContext(100, Tanh())
inputs = tensor.tensor3('inputs')
context = tensor.matrix('context').dimshuffle('x', 0, 1)
brick.apply(context, inputs=inputs)
def _build_bricks(self, *args, **kwargs):
super(AttentionEUTHM2, self)._build_bricks()
self.word_shift = MLP(
activations=[Tanh('word_shift_tanh')],
dims=[
self.config.user_embed_dim + self.config.word_embed_dim,
self.config.word_embed_dim
],
name='word_shift_mlp')
self.word_shift.weights_init = IsotropicGaussian(
std=1 / numpy.sqrt(self.config.word_embed_dim +
self.config.user_embed_dim))
self.word_shift.biases_init = Constant(0)
self.word_shift.initialize()
self.word_shift_bias = Bias(dim=1, name='word_shift_bias')
self.word_shift_bias.biases_init = Constant(0)
self.word_shift_bias.initialize()
def test_integer_sequence_generator():
# Disclaimer: here we only check shapes, not values.
readout_dim = 5
feedback_dim = 3
dim = 20
batch_size = 30
n_steps = 10
transition = GatedRecurrent(name="transition",
activation=Tanh(),
dim=dim,
weights_init=Orthogonal())
generator = SequenceGenerator(LinearReadout(
readout_dim=readout_dim,
source_names=["states"],
emitter=SoftmaxEmitter(name="emitter"),
feedbacker=LookupFeedback(readout_dim, feedback_dim),
name="readout"),
transition,
weights_init=IsotropicGaussian(0.01),
biases_init=Constant(0),
name="generator")
generator.initialize()
y = tensor.lmatrix('y')
mask = tensor.matrix('mask')
costs = generator.cost(y, mask)
assert costs.ndim == 2
costs_val = theano.function([y, mask],
[costs])(numpy.zeros((n_steps, batch_size),
dtype='int64'),
numpy.ones((n_steps, batch_size),
dtype=floatX))[0]
assert costs_val.shape == (n_steps, batch_size)
states, outputs, costs = generator.generate(iterate=True,
batch_size=batch_size,
n_steps=n_steps)
states_val, outputs_val, costs_val = theano.function(
[], [states, outputs, costs],
updates=costs.owner.inputs[0].owner.tag.updates)()
assert states_val.shape == (n_steps, batch_size, dim)
assert outputs_val.shape == (n_steps, batch_size)
assert outputs_val.dtype == 'int64'
assert costs_val.shape == (n_steps, batch_size)
def __init__(self, vocab_size, embedding_dim, state_dim,
representation_dim, **kwargs):
super(Decoder, self).__init__(**kwargs)
self.vocab_size = vocab_size
self.embedding_dim = embedding_dim
self.state_dim = state_dim
self.representation_dim = representation_dim
readout = Readout(
source_names=['states', 'feedback', 'readout_context'],
readout_dim=self.vocab_size,
emitter=SoftmaxEmitter(),
feedback_brick=LookupFeedback(vocab_size, embedding_dim),
post_merge=InitializableFeedforwardSequence(
[Bias(dim=1000).apply,
Maxout(num_pieces=2).apply,
Linear(input_dim=state_dim / 2, output_dim=100,
use_bias=False).apply,
Linear(input_dim=100).apply]),
merged_dim=1000)
self.transition = GatedRecurrentWithContext(Tanh(), dim=state_dim,
name='decoder')
# Readout will apply the linear transformation to 'readout_context'
# with a Merge brick, so no need to fork it here
self.fork = Fork([name for name in
self.transition.apply.contexts +
self.transition.apply.states
if name != 'readout_context'], prototype=Linear())
self.tanh = Tanh()
self.sequence_generator = SequenceGenerator(
readout=readout, transition=self.transition,
fork_inputs=[name for name in self.transition.apply.sequences
if name != 'mask'],
)
self.children = [self.fork, self.sequence_generator, self.tanh]
def __init__(self, config, vocab_size):
question = tensor.imatrix('question')
question_mask = tensor.imatrix('question_mask')
context = tensor.imatrix('context')
context_mask = tensor.imatrix('context_mask')
answer = tensor.ivector('answer')
candidates = tensor.imatrix('candidates')
candidates_mask = tensor.imatrix('candidates_mask')
bricks = []
question = question.dimshuffle(1, 0)
question_mask = question_mask.dimshuffle(1, 0)
context = context.dimshuffle(1, 0)
context_mask = context_mask.dimshuffle(1, 0)
# Embed questions and cntext
embed = LookupTable(vocab_size, config.embed_size, name='question_embed')
bricks.append(embed)
qembed = embed.apply(question)
cembed = embed.apply(context)
qlstms, qhidden_list = make_bidir_lstm_stack(qembed, config.embed_size, question_mask.astype(theano.config.floatX),
config.question_lstm_size, config.question_skip_connections, 'q')
clstms, chidden_list = make_bidir_lstm_stack(cembed, config.embed_size, context_mask.astype(theano.config.floatX),
config.ctx_lstm_size, config.ctx_skip_connections, 'ctx')
bricks = bricks + qlstms + clstms
# Calculate question encoding (concatenate layer1)
if config.question_skip_connections:
qenc_dim = 2*sum(config.question_lstm_size)
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list], axis=1)
else:
qenc_dim = 2*config.question_lstm_size[-1]
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list[-2:]], axis=1)
qenc.name = 'qenc'
# Calculate context encoding (concatenate layer1)
if config.ctx_skip_connections:
cenc_dim = 2*sum(config.ctx_lstm_size)
cenc = tensor.concatenate(chidden_list, axis=2)
else:
cenc_dim = 2*config.ctx_lstm_size[-1]
cenc = tensor.concatenate(chidden_list[-2:], axis=2)
cenc.name = 'cenc'
# Attention mechanism MLP
attention_mlp = MLP(dims=config.attention_mlp_hidden + [1],
activations=config.attention_mlp_activations[1:] + [Identity()],
name='attention_mlp')
attention_qlinear = Linear(input_dim=qenc_dim, output_dim=config.attention_mlp_hidden[0], name='attq')
attention_clinear = Linear(input_dim=cenc_dim, output_dim=config.attention_mlp_hidden[0], use_bias=False, name='attc')
bricks += [attention_mlp, attention_qlinear, attention_clinear]
layer1 = Tanh().apply(attention_clinear.apply(cenc.reshape((cenc.shape[0]*cenc.shape[1], cenc.shape[2])))
.reshape((cenc.shape[0],cenc.shape[1],config.attention_mlp_hidden[0]))
+ attention_qlinear.apply(qenc)[None, :, :])
layer1.name = 'layer1'
att_weights = attention_mlp.apply(layer1.reshape((layer1.shape[0]*layer1.shape[1], layer1.shape[2])))
att_weights.name = 'att_weights_0'
att_weights = att_weights.reshape((layer1.shape[0], layer1.shape[1]))
att_weights.name = 'att_weights'
attended = tensor.sum(cenc * tensor.nnet.softmax(att_weights.T).T[:, :, None], axis=0)
attended.name = 'attended'
# Now we can calculate our output
out_mlp = MLP(dims=[cenc_dim + qenc_dim] + config.out_mlp_hidden + [config.n_entities],
activations=config.out_mlp_activations + [Identity()],
name='out_mlp')
bricks += [out_mlp]
probs = out_mlp.apply(tensor.concatenate([attended, qenc], axis=1))
probs.name = 'probs'
is_candidate = tensor.eq(tensor.arange(config.n_entities, dtype='int32')[None, None, :],
tensor.switch(candidates_mask, candidates, -tensor.ones_like(candidates))[:, :, None]).sum(axis=1)
probs = tensor.switch(is_candidate, probs, -1000 * tensor.ones_like(probs))
# Calculate prediction, cost and error rate
pred = probs.argmax(axis=1)
cost = Softmax().categorical_cross_entropy(answer, probs).mean()
error_rate = tensor.neq(answer, pred).mean()
# Apply dropout
cg = ComputationGraph([cost, error_rate])
if config.w_noise > 0:
noise_vars = VariableFilter(roles=[WEIGHT])(cg)
cg = apply_noise(cg, noise_vars, config.w_noise)
if config.dropout > 0:
cg = apply_dropout(cg, qhidden_list + chidden_list, config.dropout)
[cost_reg, error_rate_reg] = cg.outputs
# Other stuff
cost_reg.name = cost.name = 'cost'
error_rate_reg.name = error_rate.name = 'error_rate'
self.sgd_cost = cost_reg
self.monitor_vars = [[cost_reg], [error_rate_reg]]
self.monitor_vars_valid = [[cost], [error_rate]]
# Initialize bricks
for brick in bricks:
brick.weights_init = config.weights_init
brick.biases_init = config.biases_init
brick.initialize()
class FRNNEmitter(AbstractEmitter, Initializable, Random):
"""An RNN emitter for the case of real outputs.
Parameters
----------
"""
def __init__(self, mlp, target_size, frame_size, k, frnn_hidden_size, frnn_step_size, const=1e-5, **kwargs):
super(FRNNEmitter, self).__init__(**kwargs)
self.mlp = mlp
self.target_size = target_size
self.frame_size = frame_size
self.k = k
self.frnn_hidden_size = frnn_hidden_size
self.const = const
self.input_dim = self.mlp.output_dim
self.frnn_step_size = frnn_step_size
# adding a step if the division is not exact.
self.number_of_steps = frame_size // frnn_step_size
self.last_steps = frame_size % frnn_step_size
if self.last_steps != 0:
self.number_of_steps += 1
self.mu = MLP(activations=[Identity()], dims=[frnn_hidden_size, k * frnn_step_size], name=self.name + "_mu")
self.sigma = MLP(
activations=[SoftPlus()], dims=[frnn_hidden_size, k * frnn_step_size], name=self.name + "_sigma"
)
self.coeff = MLP(activations=[Identity()], dims=[frnn_hidden_size, k], name=self.name + "_coeff")
self.coeff2 = NDimensionalSoftmax()
self.frnn_initial_state = Linear(
input_dim=self.input_dim, output_dim=frnn_hidden_size, name="frnn_initial_state"
)
# self.frnn_hidden = Linear(
# input_dim=frnn_hidden_size,
# output_dim=frnn_hidden_size,
# activation=Tanh(),
# name="frnn_hidden")
self.frnn_activation = Tanh(name="frnn_activation")
self.frnn_linear_transition_state = Linear(
input_dim=frnn_hidden_size, output_dim=frnn_hidden_size, name="frnn_linear_transition_state"
)
self.frnn_linear_transition_input = Linear(
input_dim=self.frnn_step_size, output_dim=frnn_hidden_size, name="frnn_linear_transition_input"
)
# self.frnn_linear_transition_output = Linear (
# input_dim = frnn_hidden_size,
# output_dim = self.rnn_hidden_dim,
# name="frnn_linear_transition_output")
self.children = [
self.mlp,
self.mu,
self.sigma,
self.coeff,
self.coeff2,
self.frnn_initial_state,
self.frnn_activation,
self.frnn_linear_transition_state,
self.frnn_linear_transition_input,
]
@application
def emit(self, readouts):
"""
keep_parameters is True if mu,sigma,coeffs must be stacked and returned
if false, only the result is given, the others will be empty list.
"""
# initial state
state = self.frnn_initial_state.apply(self.mlp.apply(readouts))
results = []
for i in range(self.number_of_steps):
last_iteration = i == self.number_of_steps - 1
# First generating distribution parameters and sampling.
mu = self.mu.apply(state)
sigma = self.sigma.apply(state) + self.const
coeff = self.coeff2.apply(self.coeff.apply(state), extra_ndim=state.ndim - 2) + self.const
shape_result = coeff.shape
shape_result = tensor.set_subtensor(shape_result[-1], self.frnn_step_size)
ndim_result = coeff.ndim
mu = mu.reshape((-1, self.frnn_step_size, self.k))
sigma = sigma.reshape((-1, self.frnn_step_size, self.k))
coeff = coeff.reshape((-1, self.k))
sample_coeff = self.theano_rng.multinomial(pvals=coeff, dtype=coeff.dtype)
idx = predict(sample_coeff, axis=-1)
# idx = predict(coeff, axis = -1) use this line for using most likely coeff.
# shapes (ls*bs)*(fs)
mu = mu[tensor.arange(mu.shape[0]), :, idx]
sigma = sigma[tensor.arange(sigma.shape[0]), :, idx]
epsilon = self.theano_rng.normal(size=mu.shape, avg=0.0, std=1.0, dtype=mu.dtype)
result = mu + sigma * epsilon # *0.6 #reduce variance.
result = result.reshape(shape_result, ndim=ndim_result)
results.append(result)
# if the total size does not correspond to the frame_size,
# this removes the need for padding
if not last_iteration:
state = self.frnn_activation.apply(
self.frnn_linear_transition_state.apply(state) + self.frnn_linear_transition_input.apply(result)
)
results = tensor.stack(results, axis=-1)
results = tensor.flatten(results, outdim=results.ndim - 1)
# truncate if not good size
if self.last_steps != 0:
results = results[tuple([slice(0, None)] * (results.ndim - 1) + [slice(0, self.frame_size)])]
return results
@application
def cost(self, readouts, outputs):
# initial state
state = self.frnn_initial_state.apply(self.mlp.apply(readouts))
inputs = outputs
mus = []
sigmas = []
coeffs = []
for i in range(self.number_of_steps):
last_iteration = i == self.number_of_steps - 1
# First generating distribution parameters and sampling.
freq_mu = self.mu.apply(state)
freq_sigma = self.sigma.apply(state) + self.const
freq_coeff = self.coeff2.apply(self.coeff.apply(state), extra_ndim=state.ndim - 2) + self.const
freq_mu = freq_mu.reshape((-1, self.frnn_step_size, self.k))
freq_sigma = freq_sigma.reshape((-1, self.frnn_step_size, self.k))
freq_coeff = freq_coeff.reshape((-1, self.k))
# mu,sigma: shape (-1,fs,k)
# coeff: shape (-1,k)
mus.append(freq_mu)
sigmas.append(freq_sigma)
coeffs.append(freq_coeff)
index = self.frnn_step_size
freq_inputs = inputs[
tuple([slice(0, None)] * (inputs.ndim - 1) + [slice(index, index + self.frnn_step_size)])
]
if not last_iteration:
state = self.frnn_activation.apply(
self.frnn_linear_transition_state.apply(state)
+ self.frnn_linear_transition_input.apply(freq_inputs)
)
mus = tensor.stack(mus, axis=-2)
sigmas = tensor.stack(sigmas, axis=-2)
coeffs = tensor.stack(coeffs, axis=-2)
mus = mus.reshape((-1, self.frnn_step_size * self.number_of_steps, self.k))
sigmas = sigmas.reshape((-1, self.frnn_step_size * self.number_of_steps, self.k))
coeffs = coeffs.repeat(self.frnn_step_size, axis=-2)
mus = mus[tuple([slice(0, None)] * (mus.ndim - 2) + [slice(0, self.frame_size)] + [slice(0, None)])]
sigmas = sigmas[tuple([slice(0, None)] * (sigmas.ndim - 2) + [slice(0, self.frame_size)] + [slice(0, None)])]
coeffs = coeffs[tuple([slice(0, None)] * (coeffs.ndim - 2) + [slice(0, self.frame_size)] + [slice(0, None)])]
# actually prob not necessary
mu = mus.reshape((-1, self.target_size))
sigma = sigmas.reshape((-1, self.target_size))
coeff = coeffs.reshape((-1, self.target_size))
return FRNN_NLL(y=outputs, mu=mu, sig=sigma, coeff=coeff, frame_size=self.frame_size, k=self.k)
@application
def initial_outputs(self, batch_size):
return tensor.zeros((batch_size, self.frame_size), dtype=floatX)
def get_dim(self, name):
# modification here to ensure the right dim.
if name == "outputs":
return self.frame_size
return super(FRNNEmitter, self).get_dim(name)
def get_prediction_function():
question = tensor.imatrix('question')
question_mask = tensor.imatrix('question_mask')
context = tensor.imatrix('context')
context_mask = tensor.imatrix('context_mask')
answer = tensor.ivector('answer')
candidates = tensor.imatrix('candidates')
candidates_mask = tensor.imatrix('candidates_mask')
"""
question = question.dimshuffle(1, 0)
question_mask = question_mask.dimshuffle(1, 0)
context = context.dimshuffle(1, 0)
context_mask = context_mask.dimshuffle(1, 0)
"""
# Embed questions and cntext
embed = bricks[-5]
qembed = embed.apply(question.dimshuffle(1, 0))
cembed = embed.apply(context.dimshuffle(1, 0))
global _qembed,_cembed
_qembed = theano.function([question], qembed)
_cembed = theano.function([context], cembed)
qhidden_list = make_bidir_lstm_stack(qembed, config.embed_size, question_mask.dimshuffle(1, 0).astype(theano.config.floatX),
config.question_lstm_size, config.question_skip_connections, 'q')
chidden_list = make_bidir_lstm_stack(cembed, config.embed_size, context_mask.dimshuffle(1, 0).astype(theano.config.floatX),
config.ctx_lstm_size, config.ctx_skip_connections, 'ctx')
global _qhidden, _chidden
_qhidden = theano.function([question, question_mask], qhidden_list)
_chidden = theano.function([context, context_mask], chidden_list)
# Calculate question encoding (concatenate layer1)
if config.question_skip_connections:
qenc_dim = 2*sum(config.question_lstm_size)
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list], axis=1)
else:
qenc_dim = 2*config.question_lstm_size[-1]
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list[-2:]], axis=1)
qenc.name = 'qenc'
# Calculate context encoding (concatenate layer1)
if config.ctx_skip_connections:
cenc_dim = 2*sum(config.ctx_lstm_size)
cenc = tensor.concatenate(chidden_list, axis=2)
else:
cenc_dim = 2*config.ctx_lstm_size[-1]
cenc = tensor.concatenate(chidden_list[-2:], axis=2)
cenc.name = 'cenc'
global _qenc, _cenc
_qenc = theano.function([question, question_mask], qenc)
_cenc = theano.function([context, context_mask], cenc)
# Attention mechanism MLP
attention_mlp = bricks[-2] #attention_mlp
attention_qlinear = bricks[4] #attq
attention_clinear = bricks[11] # attc
layer1 = Tanh().apply(attention_clinear.apply(cenc.reshape((cenc.shape[0]*cenc.shape[1], cenc.shape[2])))
.reshape((cenc.shape[0],cenc.shape[1],config.attention_mlp_hidden[0]))
+ attention_qlinear.apply(qenc)[None, :, :])
global _attention_clinear, _attention_qlinear
_attention_clinear = theano.function([context, context_mask], attention_clinear.apply(cenc.reshape((cenc.shape[0]*cenc.shape[1], cenc.shape[2]))).reshape((cenc.shape[0],cenc.shape[1],config.attention_mlp_hidden[0])))
_attention_qlinear = theano.function([question, question_mask], attention_qlinear.apply(qenc)[None, :, :])
layer1.name = 'layer1'
att_weights = attention_mlp.apply(layer1.reshape((layer1.shape[0]*layer1.shape[1], layer1.shape[2])))
att_weights.name = 'att_weights_0'
att_weights = att_weights.reshape((layer1.shape[0], layer1.shape[1]))
att_weights.name = 'att_weights'
attended = tensor.sum(cenc * tensor.nnet.softmax(att_weights.T).T[:, :, None], axis=0)
attended.name = 'attended'
global _attended
_attended = theano.function([question, question_mask, context, context_mask], attended)
# Now we can calculate our output
out_mlp = bricks[-1] #out_mlp
probs = out_mlp.apply(tensor.concatenate([attended, qenc], axis=1))
probs.name = 'probs'
f = theano.function([question, question_mask, context, context_mask], probs)
return f
class Decoder(Initializable):
def __init__(self, vocab_size, embedding_dim, state_dim,
representation_dim, **kwargs):
super(Decoder, self).__init__(**kwargs)
self.vocab_size = vocab_size
self.embedding_dim = embedding_dim
self.state_dim = state_dim
self.representation_dim = representation_dim
readout = Readout(
source_names=['states', 'feedback', 'readout_context'],
readout_dim=self.vocab_size,
emitter=SoftmaxEmitter(),
feedback_brick=LookupFeedback(vocab_size, embedding_dim),
post_merge=InitializableFeedforwardSequence(
[Bias(dim=1000).apply,
Maxout(num_pieces=2).apply,
Linear(input_dim=state_dim / 2, output_dim=100,
use_bias=False).apply,
Linear(input_dim=100).apply]),
merged_dim=1000)
self.transition = GatedRecurrentWithContext(Tanh(), dim=state_dim,
name='decoder')
# Readout will apply the linear transformation to 'readout_context'
# with a Merge brick, so no need to fork it here
self.fork = Fork([name for name in
self.transition.apply.contexts +
self.transition.apply.states
if name != 'readout_context'], prototype=Linear())
self.tanh = Tanh()
self.sequence_generator = SequenceGenerator(
readout=readout, transition=self.transition,
fork_inputs=[name for name in self.transition.apply.sequences
if name != 'mask'],
)
self.children = [self.fork, self.sequence_generator, self.tanh]
def _push_allocation_config(self):
self.fork.input_dim = self.representation_dim
self.fork.output_dims = [self.state_dim
for _ in self.fork.output_names]
@application(inputs=['representation', 'target_sentence_mask',
'target_sentence'], outputs=['cost'])
def cost(self, representation, target_sentence, target_sentence_mask):
target_sentence = target_sentence.dimshuffle(1, 0)
target_sentence_mask = target_sentence_mask.T
# The initial state and contexts, all functions of the representation
contexts = {key: value.dimshuffle('x', 0, 1)
if key not in self.transition.apply.states else value
for key, value
in self.fork.apply(representation, as_dict=True).items()}
contexts['states'] = self.tanh.apply(contexts['states'])
cost = self.sequence_generator.cost(**merge(
contexts, {'mask': target_sentence_mask,
'outputs': target_sentence,
'readout_context': representation.dimshuffle('x', 0, 1)}
))
return (cost * target_sentence_mask).sum() / target_sentence_mask.shape[1]
def __init__(self, mlp, target_size, frame_size, k, frnn_hidden_size, frnn_step_size, const=1e-5, **kwargs):
super(FRNNEmitter, self).__init__(**kwargs)
self.mlp = mlp
self.target_size = target_size
self.frame_size = frame_size
self.k = k
self.frnn_hidden_size = frnn_hidden_size
self.const = const
self.input_dim = self.mlp.output_dim
self.frnn_step_size = frnn_step_size
# adding a step if the division is not exact.
self.number_of_steps = frame_size // frnn_step_size
self.last_steps = frame_size % frnn_step_size
if self.last_steps != 0:
self.number_of_steps += 1
self.mu = MLP(activations=[Identity()], dims=[frnn_hidden_size, k * frnn_step_size], name=self.name + "_mu")
self.sigma = MLP(
activations=[SoftPlus()], dims=[frnn_hidden_size, k * frnn_step_size], name=self.name + "_sigma"
)
self.coeff = MLP(activations=[Identity()], dims=[frnn_hidden_size, k], name=self.name + "_coeff")
self.coeff2 = NDimensionalSoftmax()
self.frnn_initial_state = Linear(
input_dim=self.input_dim, output_dim=frnn_hidden_size, name="frnn_initial_state"
)
# self.frnn_hidden = Linear(
# input_dim=frnn_hidden_size,
# output_dim=frnn_hidden_size,
# activation=Tanh(),
# name="frnn_hidden")
self.frnn_activation = Tanh(name="frnn_activation")
self.frnn_linear_transition_state = Linear(
input_dim=frnn_hidden_size, output_dim=frnn_hidden_size, name="frnn_linear_transition_state"
)
self.frnn_linear_transition_input = Linear(
input_dim=self.frnn_step_size, output_dim=frnn_hidden_size, name="frnn_linear_transition_input"
)
# self.frnn_linear_transition_output = Linear (
# input_dim = frnn_hidden_size,
# output_dim = self.rnn_hidden_dim,
# name="frnn_linear_transition_output")
self.children = [
self.mlp,
self.mu,
self.sigma,
self.coeff,
self.coeff2,
self.frnn_initial_state,
self.frnn_activation,
self.frnn_linear_transition_state,
self.frnn_linear_transition_input,
]
def __init__(self, config):
inp = tensor.imatrix('bytes')
embed = theano.shared(config.embedding_matrix.astype(theano.config.floatX),
name='embedding_matrix')
in_repr = embed[inp.flatten(), :].reshape((inp.shape[0], inp.shape[1], config.repr_dim))
in_repr.name = 'in_repr'
bricks = []
states = []
# Construct predictive GRU hierarchy
hidden = []
costs = []
next_target = in_repr.dimshuffle(1, 0, 2)
for i, (hdim, cf, q) in enumerate(zip(config.hidden_dims,
config.cost_factors,
config.hidden_q)):
init_state = theano.shared(numpy.zeros((config.num_seqs, hdim)).astype(theano.config.floatX),
name='st0_%d'%i)
linear = Linear(input_dim=config.repr_dim, output_dim=3*hdim,
name="lstm_in_%d"%i)
lstm = GatedRecurrent(dim=hdim, activation=config.activation_function,
name="lstm_rec_%d"%i)
linear2 = Linear(input_dim=hdim, output_dim=config.repr_dim, name='lstm_out_%d'%i)
tanh = Tanh('lstm_out_tanh_%d'%i)
bricks += [linear, lstm, linear2, tanh]
if i > 0:
linear1 = Linear(input_dim=config.hidden_dims[i-1], output_dim=3*hdim,
name='lstm_in2_%d'%i)
bricks += [linear1]
next_target = tensor.cast(next_target, dtype=theano.config.floatX)
inter = linear.apply(theano.gradient.disconnected_grad(next_target))
if i > 0:
inter += linear1.apply(theano.gradient.disconnected_grad(hidden[-1][:-1,:,:]))
new_hidden = lstm.apply(inputs=inter[:,:,:hdim],
gate_inputs=inter[:,:,hdim:],
states=init_state)
states.append((init_state, new_hidden[-1, :, :]))
hidden += [tensor.concatenate([init_state[None,:,:], new_hidden],axis=0)]
pred = tanh.apply(linear2.apply(hidden[-1][:-1,:,:]))
costs += [numpy.float32(cf) * (-next_target * pred).sum(axis=2).mean()]
costs += [numpy.float32(cf) * q * abs(pred).sum(axis=2).mean()]
diff = next_target - pred
next_target = tensor.ge(diff, 0.5) - tensor.le(diff, -0.5)
# Construct output from hidden states
hidden = [s.dimshuffle(1, 0, 2) for s in hidden]
out_parts = []
out_dims = config.out_hidden + [config.io_dim]
for i, (dim, state) in enumerate(zip(config.hidden_dims, hidden)):
pred_linear = Linear(input_dim=dim, output_dim=out_dims[0],
name='pred_linear_%d'%i)
bricks.append(pred_linear)
lin = theano.gradient.disconnected_grad(state)
out_parts.append(pred_linear.apply(lin))
# Do prediction and calculate cost
out = sum(out_parts)
if len(out_dims) > 1:
out = config.out_hidden_act[0](name='out_act0').apply(out)
mlp = MLP(dims=out_dims,
activations=[x(name='out_act%d'%i) for i, x in enumerate(config.out_hidden_act[1:])]
+[Identity()],
name='out_mlp')
bricks.append(mlp)
out = mlp.apply(out.reshape((inp.shape[0]*(inp.shape[1]+1),-1))
).reshape((inp.shape[0],inp.shape[1]+1,-1))
pred = out.argmax(axis=2)
cost = Softmax().categorical_cross_entropy(inp.flatten(),
out[:,:-1,:].reshape((inp.shape[0]*inp.shape[1],
config.io_dim))).mean()
error_rate = tensor.neq(inp.flatten(), pred[:,:-1].flatten()).mean()
sgd_cost = cost + sum(costs)
# Initialize all bricks
for brick in bricks:
brick.weights_init = config.weights_init
brick.biases_init = config.biases_init
brick.initialize()
# apply noise
cg = ComputationGraph([sgd_cost, cost, error_rate]+costs)
if config.weight_noise > 0:
noise_vars = VariableFilter(roles=[WEIGHT])(cg)
cg = apply_noise(cg, noise_vars, config.weight_noise)
sgd_cost = cg.outputs[0]
cost = cg.outputs[1]
error_rate = cg.outputs[2]
costs = cg.outputs[3:]
# put stuff into self that is usefull for training or extensions
self.sgd_cost = sgd_cost
sgd_cost.name = 'sgd_cost'
for i in range(len(costs)):
costs[i].name = 'pred_cost_%d'%i
cost.name = 'cost'
error_rate.name = 'error_rate'
self.monitor_vars = [costs, [cost],
[error_rate]]
self.out = out[:,1:,:]
self.pred = pred[:,1:]
self.states = states
def __init__(self, config, vocab_size):
question = tensor.imatrix('question')
# set up 32-bit integer matrices
question_mask = tensor.imatrix('question_mask')
context = tensor.imatrix('context')
context_mask = tensor.imatrix('context_mask')
answer = tensor.ivector('answer')
candidates = tensor.imatrix('candidates')
candidates_mask = tensor.imatrix('candidates_mask')
# and the multple choice answers:
ans1 = tensor.ivector('ans1')
ans1_mask = tensor.ivector('ans1_mask')
ans2 = tensor.ivector('ans2')
ans2_mask = tensor.ivector('ans2_mask')
ans3 = tensor.ivector('ans3')
ans3_mask = tensor.ivector('ans3_mask')
ans4 = tensor.ivector('ans4')
ans4_mask = tensor.ivector('ans4_mask')
bricks = []
# inverts 1st and 2nd dimensions of matrix
question = question.dimshuffle(1, 0)
question_mask = question_mask.dimshuffle(1, 0)
context = context.dimshuffle(1, 0)
context_mask = context_mask.dimshuffle(1, 0)
# Embed questions and cntext
embed = LookupTable(vocab_size, config.embed_size, name='question_embed')
bricks.append(embed)
qembed = embed.apply(question)
cembed = embed.apply(context)
a1embed = embed.apply(ans1)
a2embed = embed.apply(ans2)
a3embed = embed.apply(ans3)
a4embed = embed.apply(ans4)
qlstms, qhidden_list = make_bidir_lstm_stack(qembed, config.embed_size, question_mask.astype(theano.config.floatX),
config.question_lstm_size, config.question_skip_connections, 'q')
clstms, chidden_list = make_bidir_lstm_stack(cembed, config.embed_size, context_mask.astype(theano.config.floatX),
config.ctx_lstm_size, config.ctx_skip_connections, 'ctx')
bricks = bricks + qlstms + clstms
# Calculate question encoding (concatenate layer1)
if config.question_skip_connections:
qenc_dim = 2*sum(config.question_lstm_size)
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list], axis=1)
else:
qenc_dim = 2*config.question_lstm_size[-1]
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list[-2:]], axis=1)
qenc.name = 'qenc'
# Calculate context encoding (concatenate layer1)
if config.ctx_skip_connections:
cenc_dim = 2*sum(config.ctx_lstm_size)
cenc = tensor.concatenate(chidden_list, axis=2)
else:
cenc_dim = 2*config.ctx_lstm_size[-1]
cenc = tensor.concatenate(chidden_list[-2:], axis=2)
cenc.name = 'cenc'
# Attention mechanism MLP
attention_mlp = MLP(dims=config.attention_mlp_hidden + [1],
activations=config.attention_mlp_activations[1:] + [Identity()],
name='attention_mlp')
attention_qlinear = Linear(input_dim=qenc_dim, output_dim=config.attention_mlp_hidden[0], name='attq')
attention_clinear = Linear(input_dim=cenc_dim, output_dim=config.attention_mlp_hidden[0], use_bias=False, name='attc')
bricks += [attention_mlp, attention_qlinear, attention_clinear]
layer1 = Tanh().apply(attention_clinear.apply(cenc.reshape((cenc.shape[0]*cenc.shape[1], cenc.shape[2])))
.reshape((cenc.shape[0],cenc.shape[1],config.attention_mlp_hidden[0]))
+ attention_qlinear.apply(qenc)[None, :, :])
layer1.name = 'layer1'
att_weights = attention_mlp.apply(layer1.reshape((layer1.shape[0]*layer1.shape[1], layer1.shape[2])))
att_weights.name = 'att_weights_0'
att_weights = att_weights.reshape((layer1.shape[0], layer1.shape[1]))
att_weights.name = 'att_weights'
attended = tensor.sum(cenc * tensor.nnet.softmax(att_weights.T).T[:, :, None], axis=0)
attended.name = 'attended'
# Now we can calculate our output
out_mlp = MLP(dims=[cenc_dim + qenc_dim] + config.out_mlp_hidden + [config.n_entities],
activations=config.out_mlp_activations + [Identity()],
name='out_mlp')
bricks += [out_mlp]
probs = out_mlp.apply(tensor.concatenate([attended, qenc], axis=1))
probs.name = 'probs'
# not needed anymore, since we're not only looking at entities
# is_candidate = tensor.eq(tensor.arange(config.n_entities, dtype='int32')[None, None, :],
# tensor.switch(candidates_mask, candidates, -tensor.ones_like(candidates))[:, :, None]).sum(axis=1)
# probs = tensor.switch(is_candidate, probs, -1000 * tensor.ones_like(probs))
# Calculate prediction, cost and error rate
# vocab = tensor.arange(10)
# probs = numpy.asarray([0, 0.8, 0, 0.2], dtype=numpy.float32)
# context = numpy.asarray([3, 2, 8, 1], dtype=numpy.int32)
# ans3 = numpy.asarray([2, 8, 1], dtype=numpy.int32)
# ans1 = numpy.asarray([1, 3, 4], dtype=numpy.int32)
# ans2 = numpy.asarray([1, 1, 4], dtype=numpy.int32)
# convert probs vector to one that's the same size as vocab, with all zeros except probs:
# probs = tensor.switch(is_candidate, probs, -1000 * tensor.ones_like(probs))
probsPadded = tensor.zeros_like(vocab_size, dtype=numpy.float32)
probsSubset = probsPadded[cembed] #TODO this should be masked
b = tensor.set_subtensor(probsSubset, probs)
# get the similarity score of each (masked) answer with the context probs:
ans1probs = b[a1enc]
ans1score = tensor.switch(ans1_mask, ans1probs, tensor.zeros_like(ans1probs)).sum()
ans2probs = b[a2enc]
ans2score = ans2probs.sum()
ans3probs = b[a3enc]
ans3score = ans3probs.sum()
ans4probs = b[a4enc]
ans4score = ans4probs.sum()
# and pick the best one:
allans = tensor.stacklists([ans1score, ans2score, ans3score, ans4score])
pred = tensor.argmax(allans)
cg = ComputationGraph([ans1probs, ans1score, ans2probs, ans2score, ans3probs, ans3score, ans4probs, ans4score, allans, pred])
f = cg.get_theano_function()
out = f()
#pred = probs.argmax(axis=1)
#print "pred"
#print pred TODO CHANGE THIS!
cost = Softmax().categorical_cross_entropy(answer, probs).mean()
error_rate = tensor.neq(answer, pred).mean()
# Apply dropout
cg = ComputationGraph([cost, error_rate])
if config.w_noise > 0:
noise_vars = VariableFilter(roles=[WEIGHT])(cg)
cg = apply_noise(cg, noise_vars, config.w_noise)
if config.dropout > 0:
cg = apply_dropout(cg, qhidden_list + chidden_list, config.dropout)
[cost_reg, error_rate_reg] = cg.outputs
# Other stuff
cost_reg.name = cost.name = 'cost'
error_rate_reg.name = error_rate.name = 'error_rate'
self.probs = probs
self.probs.name = "probs"
self.cost = cost
self.cost.name = "cost"
#
self.sgd_cost = cost_reg
self.monitor_vars = [[cost_reg], [error_rate_reg]]
self.monitor_vars_valid = [[cost], [error_rate]]
# Initialize bricks
for brick in bricks:
brick.weights_init = config.weights_init
brick.biases_init = config.biases_init
brick.initialize()
