def test_sample_md_dict_requirement(fresh_RE):
RE = fresh_RE
# We avoid a json ValidationError and make a user-friendly ValueError.
with pytest.raises(ValueError):
RE(simple_scan(motor), sample=1)
RE(simple_scan(motor), sample={'number': 1}) # should not raise
RE(simple_scan(motor), sample='label') # should not raise
def test_sample_md_dict_requirement(fresh_RE):
RE = fresh_RE
# We avoid a json ValidationError and make a user-friendly ValueError.
with pytest.raises(ValueError):
RE(simple_scan(motor), sample=1)
RE(simple_scan(motor), sample={'number': 1}) # should not raise
RE(simple_scan(motor), sample='label') # should not raise
def _md(md, RE):
RE.ignore_callback_exceptions = False
# Check persistence.
scan = simple_scan(motor)
RE(scan, project='sitting')
# 'project' should not persist
scan = simple_scan(motor)
RE(scan, subs={'start': [validate_dict_cb_opposite('project')]})
# ...unless we add it to RE.md
RE.md['project'] = 'sitting'
scan = simple_scan(motor)
RE(scan, subs={'start': [validate_dict_cb('project', 'sitting')]})
# new values to 'project' passed in the call override the value in md
scan = simple_scan(motor)
RE(scan, project='standing',
subs={'start': [validate_dict_cb('project', 'standing')]})
# ...but they do not update the value in md
assert RE.md['project'] == 'sitting'
def _md(md, RE, hw):
RE.ignore_callback_exceptions = False
# Check persistence.
scan = simple_scan(hw.motor)
RE(scan, project='sitting')
# 'project' should not persist
scan = simple_scan(hw.motor)
RE(scan, {'start': [validate_dict_cb_opposite('project')]})
# ...unless we add it to RE.md
RE.md['project'] = 'sitting'
scan = simple_scan(hw.motor)
RE(scan, {'start': [validate_dict_cb('project', 'sitting')]})
# new values to 'project' passed in the call override the value in md
scan = simple_scan(hw.motor)
RE(scan, {'start': [validate_dict_cb('project', 'standing')]},
project='standing')
# ...but they do not update the value in md
assert RE.md['project'] == 'sitting'
def _md(md):
RE = RunEngine(md)
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan) # missing owner, beamline_id
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan, owner='dan')
RE(scan, owner='dan', beamline_id='his desk',
group='some group', config={}) # this should work
RE(scan) # and now this should work, reusing metadata
RE.md.clear()
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan)
# We can prime the md directly.
RE.md['owner'] = 'dan'
RE.md['group'] = 'some group'
RE.md['config'] = {}
RE.md['beamline_id'] = 'his desk'
RE(scan)
# Do optional values persist?
RE(scan, project='sitting')
RE(scan, subs={'start': validate_dict_cb('project', 'sitting')})
# Persistent values are white-listed, so this should not persist.
RE(scan, mood='excited')
RE(scan, subs={'start': validate_dict_cb_opposite('mood')})
# Add 'mood' to the whitelist and check that it persists.
RE.persistent_fields.append('mood')
assert_in('mood', RE.persistent_fields)
RE(scan, mood='excited')
RE(scan, subs={'start': validate_dict_cb('mood', 'excited')})
# Remove 'project' from the whitelist and check that is stops persisting.
RE.persistent_fields.remove('project')
assert_not_in('project', RE.persistent_fields)
RE(scan, project='standing')
RE(scan)
RE(scan, subs={'start': validate_dict_cb_opposite('project')})
# Removing a field required by our Document spec is not allowed.
assert_raises(ValueError, RE.persistent_fields.remove, 'beamline_id')
def _md(md):
RE = RunEngine(md)
RE.ignore_callback_exceptions = False
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan) # missing owner, beamline_id
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan, owner='dan')
scan = simple_scan(motor)
RE(scan, owner='dan', beamline_id='his desk',
group='some group', config={}) # this should work
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan) # this should fail; none was persisted
RE.md['owner'] = 'dan'
RE.md['group'] = 'some group'
RE.md['config'] = {}
RE.md['beamline_id'] = 'his desk'
scan = simple_scan(motor)
RE(scan) # this should work
RE.md.clear()
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan)
# We can prime the md directly.
RE.md['owner'] = 'dan'
RE.md['group'] = 'some group'
RE.md['config'] = {}
RE.md['beamline_id'] = 'his desk'
scan = simple_scan(motor)
RE(scan)
# Check persistence.
scan = simple_scan(motor)
RE(scan, project='sitting')
# 'project' should not persist
scan = simple_scan(motor)
RE(scan, subs={'start': [validate_dict_cb_opposite('project')]})
# ...unless we add it to RE.md
RE.md['project'] = 'sitting'
scan = simple_scan(motor)
RE(scan, subs={'start': [validate_dict_cb('project', 'sitting')]})
# new values to 'project' passed in the call override the value in md
scan = simple_scan(motor)
RE(scan, project='standing',
subs={'start': [validate_dict_cb('project', 'standing')]})
# ...but they do not update the value in md
assert_equal(RE.md['project'], 'sitting')
def test_sample_md_dict_requirement():
scan = simple_scan(motor)
# We avoid a json ValidationError and make a user-friendly ValueError.
assert_raises(ValueError, RE, scan, sample=1)
RE(scan, sample={'number': 1}) # should not raise
def test_custom_metadata():
def assert_lion(name, doc):
assert_in('animal', doc)
assert_equal(doc['animal'], 'lion')
RE(simple_scan(motor), animal='lion', subs={'start': assert_lion})
def test_custom_metadata():
def assert_lion(name, doc):
assert 'animal' in doc
assert doc['animal'] == 'lion'
RE(simple_scan(motor), animal='lion', subs={'start': assert_lion})
def test_custom_metadata(RE, hw):
def assert_lion(name, doc):
assert 'animal' in doc
assert doc['animal'] == 'lion'
RE(simple_scan(hw.motor), {'start': assert_lion}, animal='lion')
def test_custom_metadata():
def assert_lion(name, doc):
assert 'animal' in doc
assert doc['animal'] == 'lion'
RE(simple_scan(motor), animal='lion', subs={'start': assert_lion})
def test_custom_metadata():
def assert_lion(doc):
assert_in('animal', doc)
assert_equal(doc['animal'], 'lion')
RE(simple_scan(motor), animal='lion', subs={'start': assert_lion})
def _md(md):
RE = RunEngine(md)
RE.ignore_callback_exceptions = False
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan) # missing owner, beamline_id
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan, owner='dan')
scan = simple_scan(motor)
RE(scan,
owner='dan',
beamline_id='his desk',
group='some group',
config={}) # this should work
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan) # this should fail; none was persisted
RE.md['owner'] = 'dan'
RE.md['group'] = 'some group'
RE.md['config'] = {}
RE.md['beamline_id'] = 'his desk'
scan = simple_scan(motor)
RE(scan) # this should work
RE.md.clear()
scan = simple_scan(motor)
assert_raises(KeyError, RE, scan)
# We can prime the md directly.
RE.md['owner'] = 'dan'
RE.md['group'] = 'some group'
RE.md['config'] = {}
RE.md['beamline_id'] = 'his desk'
scan = simple_scan(motor)
RE(scan)
# Check persistence.
scan = simple_scan(motor)
RE(scan, project='sitting')
# 'project' should not persist
scan = simple_scan(motor)
RE(scan, subs={'start': [validate_dict_cb_opposite('project')]})
# ...unless we add it to RE.md
RE.md['project'] = 'sitting'
scan = simple_scan(motor)
RE(scan, subs={'start': [validate_dict_cb('project', 'sitting')]})
# new values to 'project' passed in the call override the value in md
scan = simple_scan(motor)
RE(scan,
project='standing',
subs={'start': [validate_dict_cb('project', 'standing')]})
# ...but they do not update the value in md
assert_equal(RE.md['project'], 'sitting')
