class DpxRamp(Widget):
"Interface to filters needed for cleaning"
__css__ = route("ramp.css")
__javascript__ = route()
__implementation__ = "_widget.ts"
frozen = props.Bool(True)
minhfsigma = props.Float(RampStatsTask.hfsigma[0])
maxhfsigma = props.Float(RampStatsTask.hfsigma[1])
minextension = props.Float(RampStatsTask.extension[0])
fixedextension = props.Float(RampStatsTask.extension[1])
maxextension = props.Float(RampStatsTask.extension[2])
displaytype = props.Int(0)
class Icon(AbstractIcon):
"""The Icon can be used to add SVG based icons to buttons, menus etc."""
label = properties.String()
text = properties.String(
default="", help="""The text or HTML contents of the widget.""")
size = properties.Float()
fill_color = properties.String()
spin_duration = properties.Int()
class PeaksSequenceHover( # pylint: disable=too-many-instance-attributes,too-many-ancestors
HoverTool,
SequenceHoverMixin
):
"tooltip over peaks"
maxcount = props.Int(3)
framerate = props.Float(1.)
bias = props.Float(0.)
stretch = props.Float(0.)
updating = props.String('')
biases = props.Dict(props.String, props.Float)
stretches = props.Dict(props.String, props.Float)
__implementation__ = SequenceHoverMixin.impl(
'PeaksSequenceHover',
{
'stretches': ('[p.Any, {}]', 'any'),
'biases': ('[p.Any, {}]', 'any')
},
__file__
)
@classmethod
def create(cls, ctrl, doc, fig, mdl, xrng = None): # pylint: disable=too-many-arguments
"Creates the hover tool for histograms"
self = super().create(ctrl, doc, fig, mdl, xrng = xrng)
jsc = CustomJS(args = {'fig': fig, 'source': self.source},
code = 'cb_obj.apply_update(fig, source)')
self.js_on_change("updating", jsc)
return self
def reset(self, resets, ctrl, mdl): # pylint: disable=arguments-differ
"Creates the hover tool for histograms"
super().reset(resets, ctrl, mdl,
biases = {i: j.bias for i, j in mdl.distances.items()},
stretches = {i: j.stretch for i, j in mdl.distances.items()})
def jsslaveaxes(self, fig, src): # pylint: disable=arguments-differ
"slaves a histogram's axes to its y-axis"
rng = fig.y_range
rng.callback = CustomJS(code = "hvr.on_change_bounds(fig, src)",
args = dict(fig = fig, src = src, hvr = self))
rng = fig.extra_y_ranges["bases"]
rng.callback = CustomJS(code = "hvr.on_change_bases(fig)",
args = dict(fig = fig, hvr = self))
class DpxCleaning(Widget):
"Interface to filters needed for cleaning"
__css__ = route("cleaning.css")
__javascript__ = route()
__implementation__ = "_widget.ts"
frozen = props.Bool(True)
framerate = props.Float(30.)
figure = props.Instance(Figure)
fixedbeads = props.String("")
subtracted = props.String("")
subtractcurrent = props.Int(0)
maxabsvalue = props.Float(getattr(DataCleaningTask, 'maxabsvalue'))
maxderivate = props.Float(getattr(DataCleaningTask, 'maxderivate'))
minpopulation = props.Float(getattr(DataCleaningTask, 'minpopulation'))
minhfsigma = props.Float(getattr(DataCleaningTask, 'minhfsigma'))
maxhfsigma = props.Float(getattr(DataCleaningTask, 'maxhfsigma'))
minextent = props.Float(getattr(DataCleaningTask, 'minextent'))
maxextent = props.Float(getattr(DataCleaningTask, 'maxextent'))
maxsaturation = props.Float(getattr(DataCleaningTask, 'maxsaturation'))
lambda p, kwargs: (bp.ColumnData(bp.Any, bp.Seq(bp.Any), **kwargs), [(
bp.PandasDataFrame, lambda x: ColumnDataSource._data_from_df(x))]),
pm.DateRange:
lambda p, kwargs: bp.Tuple(bp.Datetime, bp.Datetime, **kwargs),
pm.Date:
lambda p, kwargs: bp.Datetime(**kwargs),
pm.Dict:
lambda p, kwargs: bp.Dict(bp.String, bp.Any, **kwargs),
pm.Event:
lambda p, kwargs: bp.Bool(**kwargs),
pm.Integer:
lambda p, kwargs: bp.Int(**kwargs),
pm.List:
lambda p, kwargs: bp.List(bp.Any, **kwargs),
pm.Number:
lambda p, kwargs: bp.Float(**kwargs),
pm.NumericTuple:
lambda p, kwargs: bp.Tuple(*(bp.Float for p in p.length), **kwargs),
pm.Range:
lambda p, kwargs: bp.Tuple(bp.Float, bp.Float, **kwargs),
pm.String:
lambda p, kwargs: bp.String(**kwargs),
pm.Tuple:
lambda p, kwargs: bp.Tuple(*(bp.Any for p in p.length), **kwargs),
}
def construct_data_model(parameterized, name=None, ignore=[], types={}):
"""
Dynamically creates a Bokeh DataModel class from a Parameterized
object.
class DpxHoverModel(
HoverTool, # pylint: disable=too-many-instance-attributes,too-many-ancestors
SequenceHoverMixin):
"controls keypress actions"
maxcount = props.Int(3)
framerate = props.Float(1.)
shape = props.Tuple(props.Int, props.Int, default=(0, 0))
cycle = props.Int(-1)
bias = props.Float(0.)
stretch = props.Float(0.)
updating = props.String('')
rawrend = props.Instance(Renderer)
impl = SequenceHoverMixin.impl
__implementation__ = impl(
'DpxHoverModel', {
'_hvr_cnt': ('[p.Number, -1]', 'number'),
'shape': ('[p.Array, [2,1]]', 'number[]'),
'cycle': ('[p.Int, -1]', 'number'),
'rawrend': ('[p.Instance, null]', 'any')
}, __file__)
@staticmethod
def _createrawdata(data, shape):
return dict(t=data['t'][:shape[1]], z=data['z'][:shape[1]])
@staticmethod
def __settooltips(fig, theme):
tooltips = theme.tooltips
hover = fig.select(DpxHoverTool)
if tooltips is None or len(tooltips) == 0:
if len(hover):
hover[0].tooltips = None
elif len(hover):
name = theme.raw.glyph
rend = [
i for i in fig.renderers if hasattr(i, 'glyph')
and type(i.glyph).__name__.lower() == name
][0]
hover[0].tooltips = tooltips
hover[0].renderers = [rend]
rend.selection_glyph = None
rend.nonselection_glyph = None
rend.glyph.radius_dimension = 'x'
rend.glyph.radius = theme.radius
def __settap(self, mdl, fig, source, theme):
tap = fig.select(TapTool)
if tap is not None and len(tap):
src = ColumnDataSource(self._createrawdata(source.data,
self.shape))
sel = themed(mdl, theme.selection)
glyph = PlotAttrsView(sel).addto(fig, x='t', y='z', source=src)
args = dict(hvr=self, hvrsrc=src, rawsrc=source, glyph=glyph)
code = "hvr.launch_hover(rawsrc, hvrsrc, glyph)"
self.rawrend = glyph
source.callback = CustomJS(code=code, args=args)
def createraw(self, mdl, fig, source, shape, theme): # pylint: disable=too-many-arguments
"creates the hover tool"
self.shape = tuple(shape)
self.__settooltips(fig, theme)
self.__settap(mdl, fig, source, theme)
def slaveaxes(self, fig, src):
"slaves a histogram's axes to its y-axis"
fig.y_range.callback = CustomJS(
code="hvr.on_change_hist_bounds(fig, src)",
args=dict(hvr=self, fig=fig, src=src))
def resetraw(self, fig, rdata, shape, resets):
"updates the tooltips for a new file"
hover = fig.select(DpxHoverTool)
if len(hover) == 0:
return
resets[self]['shape'] = shape
if self.rawrend is not None:
resets[self.rawrend]['visible'] = False
resets[self.rawrend.data_source]['data'] = self._createrawdata(
rdata, shape)