def classical_gear(module, large_teeth, small_teeth):
xdr = Range1d(start=-300, end=150)
ydr = Range1d(start=-100, end=100)
source = ColumnDataSource(data=dict(dummy=[0]))
plot = Plot(
title=None,
x_range=xdr, y_range=ydr,
plot_width=800, plot_height=800
)
plot.add_tools(PanTool(), WheelZoomTool(), ResetTool())
radius = pitch_radius(module, large_teeth)
angle = 0
glyph = Gear(
x=-radius, y=0,
module=module, teeth=large_teeth, angle=angle,
fill_color=fill_color[0], line_color=line_color
)
plot.add_glyph(source, glyph)
radius = pitch_radius(module, small_teeth)
angle = half_tooth(small_teeth)
glyph = Gear(
x=radius, y=0,
module=module, teeth=small_teeth, angle=angle,
fill_color=fill_color[1], line_color=line_color
)
plot.add_glyph(source, glyph)
return plot
def make_plot():
xdr = DataRange1d(sources=[source.columns("dates")])
ydr = DataRange1d(sources=[source.columns("downloads")])
plot = Plot(title="Product downloads",
x_range=xdr,
y_range=ydr,
plot_width=400,
plot_height=400)
line = Line(x="dates", y="downloads", line_color="blue")
plot.add_glyph(source, line)
circle = Circle(x="dates", y="downloads", fill_color="red")
plot.add_glyph(source, circle)
xaxis = DatetimeAxis()
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
plot.add_layout(Grid(dimension=0, ticker=xaxis.ticker))
plot.add_layout(Grid(dimension=1, ticker=yaxis.ticker))
plot.add_tools(HoverTool(tooltips=dict(downloads="@downloads")))
return plot, source
def make_plot():
source = ColumnDataSource(
dict(
dates=[ date(2014, 3, i) for i in [1, 2, 3, 4, 5] ],
downloads=[100, 27, 54, 64, 75],
)
)
xdr = DataRange1d(sources=[source.columns("dates")])
ydr = DataRange1d(sources=[source.columns("downloads")])
plot = Plot(title="Product downloads", x_range=xdr, y_range=ydr, plot_width=400, plot_height=400)
line = Line(x="dates", y="downloads", line_color="blue")
plot.add_glyph(source, line)
circle = Circle(x="dates", y="downloads", fill_color="red")
plot.add_glyph(source, circle)
xaxis = DatetimeAxis()
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
plot.add_layout(Grid(dimension=0, ticker=xaxis.ticker))
plot.add_layout(Grid(dimension=1, ticker=yaxis.ticker))
plot.add_tools(HoverTool(tooltips=dict(downloads="@downloads")))
return plot, source
def make_plot(xname, yname, xax=False, yax=False, text=None):
plot = Plot(x_range=xdr,
y_range=ydr,
background_fill="#efe8e2",
border_fill='white',
title="",
min_border=2,
border_symmetry=None,
plot_width=250,
plot_height=250)
circle = Circle(x=xname,
y=yname,
fill_color="color",
fill_alpha=0.2,
size=4,
line_color="color")
plot.add_glyph(source, circle)
xticker = BasicTicker()
if xax:
xaxis = LinearAxis()
plot.add_layout(xaxis, 'below')
xticker = xaxis.ticker
plot.add_layout(Grid(dimension=0, ticker=xticker))
yticker = BasicTicker()
if yax:
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
yticker = yaxis.ticker
plot.add_layout(Grid(dimension=1, ticker=yticker))
plot.add_tools(PanTool(), WheelZoomTool())
if text:
text = " ".join(text.split('_'))
text = Text(x={
'field': 'xcenter',
'units': 'screen'
},
y={
'field': 'ycenter',
'units': 'screen'
},
text=[text],
angle=pi / 4,
text_font_style="bold",
text_baseline="top",
text_color="#ffaaaa",
text_alpha=0.7,
text_align="center",
text_font_size="28pt")
plot.add_glyph(text_source, text)
return plot
def sample_gear():
xdr = Range1d(start=-30, end=30)
ydr = Range1d(start=-30, end=30)
source = ColumnDataSource(data=dict(dummy=[0]))
plot = Plot(title=None, x_range=xdr, y_range=ydr, plot_width=800, plot_height=800)
plot.add_tools(PanTool(), WheelZoomTool(), ResetTool())
glyph = Gear(x=0, y=0, module=5, teeth=8, angle=0, shaft_size=0.2, fill_color=fill_color[2], line_color=line_color)
plot.add_glyph(source, glyph)
return plot
def make_plot(name, glyph):
plot = Plot(x_range=xdr, y_range=ydr, min_border=80)
plot.add_glyph(source, glyph)
xaxis = LinearAxis()
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
plot.add_layout(Grid(dimension=0, ticker=xaxis.ticker))
plot.add_layout(Grid(dimension=1, ticker=yaxis.ticker))
plot.add_tools(PanTool(), WheelZoomTool())
document.add(plot)
session.store_document(document)
def make_plot(name, glyph):
plot = Plot(x_range=xdr, y_range=ydr, min_border=80)
plot.add_glyph(source, glyph)
xaxis = LinearAxis()
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
plot.add_layout(Grid(dimension=0, ticker=xaxis.ticker))
plot.add_layout(Grid(dimension=1, ticker=yaxis.ticker))
plot.add_tools(PanTool(), WheelZoomTool())
document.add(plot)
session.store_document(document)
def make_plot(source, xname, yname, line_color, xdr=None, ydr=None):
""" Returns a tuple (plot, [obj1...objN]); the former can be added
to a GridPlot, and the latter is added to the plotcontext.
"""
if xdr is None:
xdr = DataRange1d(sources=[source.columns(xname)])
if ydr is None:
ydr = DataRange1d(sources=[source.columns(yname)])
plot = Plot(x_range=xdr, y_range=ydr, min_border=50)
plot.add_layout(LinearAxis(), 'below')
plot.add_layout(LinearAxis(), 'left')
plot.add_glyph(source, Line(x=xname, y=yname, line_color=line_color))
plot.add_tools(PanTool(), WheelZoomTool())
return plot
def epicyclic_gear(module, sun_teeth, planet_teeth):
xdr = Range1d(start=-150, end=150)
ydr = Range1d(start=-150, end=150)
source = ColumnDataSource(data=dict(dummy=[0]))
plot = Plot(
title=None,
x_range=xdr, y_range=ydr,
plot_width=800, plot_height=800
)
plot.add_tools(PanTool(), WheelZoomTool(), ResetTool())
annulus_teeth = sun_teeth + 2*planet_teeth
glyph = Gear(
x=0, y=0,
module=module, teeth=annulus_teeth, angle=0,
fill_color=fill_color[0], line_color=line_color, internal=True
)
plot.add_glyph(source, glyph)
glyph = Gear(
x=0, y=0,
module=module, teeth=sun_teeth, angle=0,
fill_color=fill_color[2], line_color=line_color
)
plot.add_glyph(source, glyph)
sun_radius = pitch_radius(module, sun_teeth)
planet_radius = pitch_radius(module, planet_teeth)
radius = sun_radius + planet_radius
angle = half_tooth(planet_teeth)
for i, j in [(+1, 0), (0, +1), (-1, 0), (0, -1)]:
glyph = Gear(
x=radius*i, y=radius*j,
module=module, teeth=planet_teeth, angle=angle,
fill_color=fill_color[1], line_color=line_color
)
plot.add_glyph(source, glyph)
return plot
def make_plot(source, xname, yname, line_color, xdr=None, ydr=None):
""" Returns a tuple (plot, [obj1...objN]); the former can be added
to a GridPlot, and the latter is added to the plotcontext.
"""
if xdr is None:
xdr = DataRange1d(sources=[source.columns(xname)])
if ydr is None:
ydr = DataRange1d(sources=[source.columns(yname)])
plot = Plot(x_range=xdr, y_range=ydr, min_border=50)
plot.add_layout(LinearAxis(), 'below')
plot.add_layout(LinearAxis(), 'left')
plot.add_glyph(source, Line(x=xname, y=yname, line_color=line_color))
plot.add_tools(PanTool(), WheelZoomTool())
return plot
def large_plot():
source = ColumnDataSource(data=dict(x=[0, 1], y=[0, 1]))
xdr = Range1d(start=0, end=1)
xdr.tags.append("foo")
xdr.tags.append("bar")
ydr = Range1d(start=10, end=20)
ydr.tags.append("foo")
plot = Plot(x_range=xdr, y_range=ydr)
ydr2 = Range1d(start=0, end=100)
plot.extra_y_ranges = {"liny": ydr2}
circle = Circle(x="x", y="y", fill_color="red", size=5, line_color="black")
plot.add_glyph(source, circle, name="mycircle")
line = Line(x="x", y="y")
plot.add_glyph(source, line, name="myline")
rect = Rect(x="x", y="y", width=1, height=1, fill_color="green")
plot.add_glyph(source, rect, name="myrect")
plot.add_layout(DatetimeAxis(), 'below')
plot.add_layout(LogAxis(), 'left')
plot.add_layout(LinearAxis(y_range_name="liny"), 'left')
plot.add_layout(Grid(dimension=0), 'left')
plot.add_layout(Grid(dimension=1), 'left')
plot.add_tools(
BoxZoomTool(),
PanTool(),
PreviewSaveTool(),
ResetTool(),
ResizeTool(),
WheelZoomTool(),
)
return plot
def altitude_profile(data):
plot = Plot(title="%s - Altitude Profile" % title,
plot_width=800,
plot_height=400)
xaxis = LinearAxis(axis_label="Distance (km)")
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis(axis_label="Altitude (m)")
plot.add_layout(yaxis, 'left')
xgrid = Grid(plot=plot, dimension=0, ticker=xaxis.ticker)
ygrid = Grid(plot=plot, dimension=1, ticker=yaxis.ticker)
plot.renderers.extend([xgrid, ygrid])
plot.add_tools(PanTool(), WheelZoomTool(), ResetTool(), BoxSelectTool())
X, Y = data.dist, data.alt
y0 = min(Y)
patches_source = ColumnDataSource(
dict(xs=[[X[i], X[i + 1], X[i + 1], X[i]] for i in range(len(X[:-1]))],
ys=[[y0, y0, Y[i + 1], Y[i]] for i in range(len(Y[:-1]))],
color=data.colors[:-1]))
patches = Patches(xs="xs", ys="ys", fill_color="color", line_color="color")
plot.add_glyph(patches_source, patches)
line_source = ColumnDataSource(dict(
x=data.dist,
y=data.alt,
))
line = Line(x='x', y='y', line_color="black", line_width=1)
plot.add_glyph(line_source, line)
plot.x_range = DataRange1d(sources=[line_source.columns("x")])
plot.y_range = DataRange1d(sources=[line_source.columns("y")])
return plot
def altitude_profile(data):
plot = Plot(title="%s - Altitude Profile" % title, plot_width=800, plot_height=400)
xaxis = LinearAxis(axis_label="Distance (km)")
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis(axis_label="Altitude (m)")
plot.add_layout(yaxis, 'left')
xgrid = Grid(plot=plot, dimension=0, ticker=xaxis.ticker)
ygrid = Grid(plot=plot, dimension=1, ticker=yaxis.ticker)
plot.renderers.extend([xgrid, ygrid])
plot.add_tools(PanTool(), WheelZoomTool(), ResetTool(), BoxSelectTool())
X, Y = data.dist, data.alt
y0 = min(Y)
patches_source = ColumnDataSource(dict(
xs = [ [X[i], X[i+1], X[i+1], X[i]] for i in range(len(X[:-1])) ],
ys = [ [y0, y0, Y[i+1], Y[i]] for i in range(len(Y[:-1])) ],
color = data.colors[:-1]
))
patches = Patches(xs="xs", ys="ys", fill_color="color", line_color="color")
plot.add_glyph(patches_source, patches)
line_source = ColumnDataSource(dict(
x = data.dist,
y = data.alt,
))
line = Line(x='x', y='y', line_color="black", line_width=1)
plot.add_glyph(line_source, line)
plot.x_range = DataRange1d(sources=[line_source.columns("x")])
plot.y_range = DataRange1d(sources=[line_source.columns("y")])
return plot
def large_plot():
source = ColumnDataSource(data=dict(x=[0, 1], y=[0, 1]))
xdr = Range1d(start=0, end=1)
xdr.tags.append("foo")
xdr.tags.append("bar")
ydr = Range1d(start=10, end=20)
ydr.tags.append("foo")
plot = Plot(x_range=xdr, y_range=ydr)
ydr2 = Range1d(start=0, end=100)
plot.extra_y_ranges = {"liny": ydr2}
circle = Circle(x="x", y="y", fill_color="red", size=5, line_color="black")
plot.add_glyph(source, circle, name="mycircle")
line = Line(x="x", y="y")
plot.add_glyph(source, line, name="myline")
rect = Rect(x="x", y="y", width=1, height=1, fill_color="green")
plot.add_glyph(source, rect, name="myrect")
plot.add_layout(DatetimeAxis(), 'below')
plot.add_layout(LogAxis(), 'left')
plot.add_layout(LinearAxis(y_range_name="liny"), 'left')
plot.add_layout(Grid(dimension=0), 'left')
plot.add_layout(Grid(dimension=1), 'left')
plot.add_tools(
BoxZoomTool(), PanTool(), PreviewSaveTool(), ResetTool(), ResizeTool(), WheelZoomTool(),
)
return plot
def make_plot(xname, yname, xax=False, yax=False, text=None):
plot = Plot(
x_range=xdr, y_range=ydr, background_fill="#efe8e2",
border_fill='white', title="", min_border=2, border_symmetry=None,
plot_width=250, plot_height=250)
circle = Circle(x=xname, y=yname, fill_color="color", fill_alpha=0.2, size=4, line_color="color")
plot.add_glyph(source, circle)
xticker = BasicTicker()
if xax:
xaxis = LinearAxis()
plot.add_layout(xaxis, 'below')
xticker = xaxis.ticker
plot.add_layout(Grid(dimension=0, ticker=xticker))
yticker = BasicTicker()
if yax:
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
yticker = yaxis.ticker
plot.add_layout(Grid(dimension=1, ticker=yticker))
plot.add_tools(PanTool(), WheelZoomTool())
if text:
text = " ".join(text.split('_'))
text = Text(
x={'field':'xcenter', 'units':'screen'},
y={'field':'ycenter', 'units':'screen'},
text=[text], angle=pi/4, text_font_style="bold", text_baseline="top",
text_color="#ffaaaa", text_alpha=0.7, text_align="center", text_font_size="28pt"
)
plot.add_glyph(text_source, text)
return plot
data=dict(
county_xs=[us_counties[code]["lons"] for code in us_counties if us_counties[code]["state"] not in ["ak", "hi", "pr", "gu", "vi", "mp", "as"]],
county_ys=[us_counties[code]["lats"] for code in us_counties if us_counties[code]["state"] not in ["ak", "hi", "pr", "gu", "vi", "mp", "as"]],
county_colors=county_colors
)
)
xdr = DataRange1d(sources=[state_source.columns("state_xs")])
ydr = DataRange1d(sources=[state_source.columns("state_ys")])
plot = Plot(x_range=xdr, y_range=ydr, min_border=0, border_fill="white",
title="2009 Unemployment Data", plot_width=1300, plot_height=800, toolbar_location="left")
county_patches = Patches(xs="county_xs", ys="county_ys", fill_color="county_colors", fill_alpha=0.7, line_color="white", line_width=0.5)
plot.add_glyph(county_source, county_patches)
state_patches = Patches(xs="state_xs", ys="state_ys", fill_alpha=0.0, line_color="#884444", line_width=2)
plot.add_glyph(state_source, state_patches)
plot.add_tools(ResizeTool())
doc = Document()
doc.add(plot)
if __name__ == "__main__":
filename = "choropleth.html"
with open(filename, "w") as f:
f.write(file_html(doc, INLINE, "Choropleth of all US counties, Unemployment 2009"))
print("Wrote %s" % filename)
view(filename)
toolbar_location="left")
county_patches = Patches(xs="county_xs",
ys="county_ys",
fill_color="county_colors",
fill_alpha=0.7,
line_color="white",
line_width=0.5)
plot.add_glyph(county_source, county_patches)
state_patches = Patches(xs="state_xs",
ys="state_ys",
fill_alpha=0.0,
line_color="#884444",
line_width=2)
plot.add_glyph(state_source, state_patches)
plot.add_tools(ResizeTool())
doc = Document()
doc.add(plot)
if __name__ == "__main__":
filename = "choropleth.html"
with open(filename, "w") as f:
f.write(
file_html(doc, INLINE,
"Choropleth of all US counties, Unemployment 2009"))
print("Wrote %s" % filename)
view(filename)
update_data()
plot = Plot(title="oprD vs. PAO1 Differences", plot_width=1000, plot_height=3000,
x_range=Range1d(start=-0.5, end=seqLength + 15),
y_range=FactorRange(factors=strains))
plot.add_glyph(source, Rect(x="pos", y="strain", width=0.95, height=0.95, fill_color="colour", line_color=None))
plot.add_glyph(source2, Rect(x="pos", y="strain", width=5, height=0.95, fill_color="colour", line_color=None))
plot.add_tools(PanTool(), WheelZoomTool(), ResetTool(), HoverTool(tooltips = OrderedDict([
("strain", "@strain"),
("site", "@pos"),
("protien", "@curProtien"),
("PAO1", "@refProtien"),
("tot. diff.", "@diffCounts"),
("MIC", "@MIC")
])
) )
def update_plot():
print("Updating plot ranges with new seqLength = {}".format(seqLength))
plot.title = porin + " vs. PAO1 Differences"
plot.x_range.end = seqLength + 15
plot.y_range.factors = strains
def on_porin_change(obj, attr, old, new):
"Load the new porin data"
print("Updating to porin: " + new)
global porin
z = cos(x)
source = ColumnDataSource(data=dict(x=x, y=y))
xdr = DataRange1d(sources=[source.columns("x")])
ydr = DataRange1d(sources=[source.columns("y")])
plot = Plot(x_range=xdr, y_range=ydr, min_border=50)
line_glyph = Line(x="x", y="y", line_color="blue")
plot.add_glyph(source, line_glyph)
plot.add_layout(LinearAxis(), 'below')
plot.add_layout(LinearAxis(), 'left')
pan = PanTool()
wheel_zoom = WheelZoomTool()
preview_save = PreviewSaveTool()
plot.add_tools(pan, wheel_zoom, preview_save)
doc = Document()
doc.add(plot)
if __name__ == "__main__":
filename = "line.html"
with open(filename, "w") as f:
f.write(file_html(doc, INLINE, "Line Glyph Example"))
print("Wrote %s" % filename)
view(filename)
# Create an array of times, starting at the current time, and extending
# for len(x) number of hours.
times = np.arange(len(x)) * 3600000 + time.time()
source = ColumnDataSource(
data=dict(x=x, y=y, times=times)
)
xdr = DataRange1d(sources=[source.columns("times")])
ydr = DataRange1d(sources=[source.columns("y")])
plot = Plot(x_range=xdr, y_range=ydr, min_border=80)
circle = Circle(x="times", y="y", fill_color="red", size=5, line_color="black")
plot.add_glyph(source, circle)
plot.add_layout(DatetimeAxis(), 'below')
plot.add_layout(DatetimeAxis(), 'left')
plot.add_tools(PanTool(), WheelZoomTool())
doc = Document()
doc.add(plot)
if __name__ == "__main__":
filename = "dateaxis.html"
with open(filename, "w") as f:
f.write(file_html(doc, INLINE, "Date Axis Example"))
print("Wrote %s" % filename)
view(filename)
z = cos(x)
source = ColumnDataSource(data=dict(x=x, y=y))
xdr = DataRange1d(sources=[source.columns("x")])
ydr = DataRange1d(sources=[source.columns("y")])
plot = Plot(x_range=xdr, y_range=ydr, min_border=50)
line_glyph = Line(x="x", y="y", line_color="blue")
plot.add_glyph(source, line_glyph)
plot.add_layout(LinearAxis(), 'below')
plot.add_layout(LinearAxis(), 'left')
pan = PanTool()
wheel_zoom = WheelZoomTool()
preview_save = PreviewSaveTool()
plot.add_tools(pan, wheel_zoom, preview_save)
doc = Document()
doc.add(plot)
if __name__ == "__main__":
filename = "line.html"
with open(filename, "w") as f:
f.write(file_html(doc, INLINE, "Line Glyph Example"))
print("Wrote %s" % filename)
view(filename)
source = ColumnDataSource(data=dict(x=x, y=y))
xdr = DataRange1d(sources=[source.columns("x")])
ydr = DataRange1d(sources=[source.columns("y")])
plot = Plot(x_range=xdr, y_range=ydr, min_border=50)
line_glyph = Line(x="x", y="y", line_color="blue")
plot.add_glyph(source, line_glyph)
plot.add_layout(LinearAxis(), 'below')
plot.add_layout(LinearAxis(), 'left')
pan = PanTool()
wheel_zoom = WheelZoomTool()
preview_save = PreviewSaveTool()
object_explorer = ObjectExplorerTool()
plot.add_tools(pan, wheel_zoom, preview_save, object_explorer)
doc = Document()
doc.add(plot)
if __name__ == "__main__":
filename = "line.html"
with open(filename, "w") as f:
f.write(file_html(doc, INLINE, "Line Glyph Example"))
print("Wrote %s" % filename)
view(filename)
xdr = DataRange1d(sources=[source.columns("x")])
ydr = DataRange1d(sources=[source.columns("y")])
plot = Plot(x_range=xdr, y_range=ydr, min_border=80)
circle = Circle(
x="x", y="y", size="r",
fill_color="red", line_color="black"
)
plot.add_glyph(source, circle)
xaxis = LinearAxis()
plot.add_layout(xaxis, 'below')
yaxis = LinearAxis()
plot.add_layout(yaxis, 'left')
plot.add_layout(Grid(dimension=0, ticker=xaxis.ticker))
plot.add_layout(Grid(dimension=1, ticker=yaxis.ticker))
plot.add_tools(PanTool(), WheelZoomTool())
document.add(plot)
session.store_document(document)
link = session.object_link(document.context)
print ("please visit %s to see plots" % link)
view(link)
