def runScattering(acqEntries, configSetting):
for seqIndex in range(len(acqEntries)):
acqEntry = acqEntries[seqIndex]
sampleEntry = samples[acqEntry['sample']]
# Click if runnable
if isRunScattering(acqEntry['runId']):
# Set sample
quokka.setSample(sampleEntry['position'], sampleEntry['name'], sampleEntry['description'], sampleEntry['thickness'], isDriveSampleStage())
# Clear transmission flag
sics.set('transmissionflag', 0)
sleep(0.1)
# Set attenuation
log('Finding safe attenuation value ...')
startingAttenuation = driveSafeAttenuation(configSetting['manualAttenuationAlgorithm'], configSetting['startingAttenuation'])
# Acquire data
mode = configSetting['scatteringMode']
preset = getScatteringPreset(acqEntry['runId'], acqEntry['preset'])
updateScatteringRunState(acqEntry['runId'], True)
log('Start scattering run on ' + sampleEntry['name'] + ' (mode: ' + mode.key + ', preset: ' + str(preset) + ') ... ')
# Scan (force scan if this is a dark current scan)
dataFile = scan(mode, dataType.HISTOGRAM_XY, preset, getForcedScanValue(sampleEntry['type']))
# Update data file name
updateScatteringRunState(acqEntry['runId'], False)
updateScatteringDetails(acqEntry['runId'], dataFile[-14:-7], getLambdaValue(), getAttValue(), getL1Value(), getL2Value())
# Print instrument state
sleep(0.2)
# Drive attenuation back safer value
log('Drive attenuation back to safe value ...')
if startingAttenuation is None:
startingAttenuation = 300
driveAtt(startingAttenuation)
quokka.printQuokkaSettings()
def runTransmission(acqEntries, configSetting):
for seqIndex in range(len(acqEntries)):
acqEntry = acqEntries[seqIndex]
sampleEntry = samples[acqEntry['sample']]
# Click if runnable
if isRunTransmission(acqEntry['runId']):
# Set sample
quokka.setSample(sampleEntry['position'], sampleEntry['name'], sampleEntry['description'], sampleEntry['thickness'], isDriveSampleStage())
# Set transmission flag
sics.set('transmissionflag', 1)
sleep(0.1)
# Set attenuation
# Acquire data
mode = configSetting['transmissionMode']
preset = configSetting['transmissionPreset']
updateTransmissionRunState(acqEntry['runId'], True)
log('Start transmission run on ' + sampleEntry['name'] + ' ...')
dataFile = scan(mode, dataType.HISTOGRAM_XY, preset, getForcedScanValue(sampleEntry['type']))
# Update data file name
updateTransmissionRunState(acqEntry['runId'], False)
updateTransmissionDetails(acqEntry['runId'], dataFile[-14:-7], getLambdaValue(), getAttValue(), getL1Value(), getL2Value())
# Print instrument state
sleep(0.2)
quokka.printQuokkaSettings()
