def build_report(report_data, request_data, report_property, sections):
""" Assembles report home folder, configures DRMAA and R related files
and spawns a new process for reports DRMAA job on cluster.
:param report_data: report info dictionary
:type report_data: dict
:param request_data: a copy of request object
:type request_data: HTTPrequest
:param report_property: report property form
:type report_property: breezeForms.ReportPropsForm
:param sections: a list of 'Rscripts' db objects
:type sections: list
:return: True
:rtype: bool
"""
from breeze.models import Project, UserProfile, ReportType, Report
from django.contrib.auth.models import User
log = logger.getChild("build_report")
assert isinstance(log, logging.getLoggerClass())
assert isinstance(request_data.user, User)
# get the request ReportType
rt = ReportType.objects.get(type=report_data["report_type"])
# list of users that will have access to this report
shared_users = aux.extract_users(request_data.POST.get("Groups"), request_data.POST.get("Individuals"))
if shared_users == list() and request_data.POST.get("shared"):
shared_users = request_data.POST.getlist("shared")
# author
the_user = request_data.user
the_user.prof = UserProfile.objects.get(user=the_user)
assert isinstance(the_user.prof, UserProfile)
# create initial instance so that we can use its db id
dbitem = Report(
_type=rt,
_name=report_data["instance_name"],
_author=the_user,
project=Project.objects.get(id=request_data.POST.get("project")),
_institute=the_user.prof.institute_info,
_breeze_stat=JobStat.INIT,
rora_id=report_data["instance_id"],
)
dbitem.assemble(request_data=request_data, shared_users=shared_users, sections=sections)
dbitem.submit_to_cluster()
return True
def build_report(report_data, request_data, report_property, sections):
""" Assembles report home folder, configures DRMAA and R related files
and spawns a new process for reports DRMAA job on cluster.
:param report_data: report info dictionary
:type report_data: dict
:param request_data: a copy of request object
:type request_data: HTTPrequest
:param report_property: report property form
:type report_property: breezeForms.ReportPropsForm
:param sections: a list of 'Rscripts' db objects
:type sections: list
:return: True
:rtype: bool
"""
from breeze.models import Project, UserProfile, ReportType, Report, ComputeTarget
from django.contrib.auth.models import User
log = logger.getChild('build_report')
assert isinstance(log, logging.getLoggerClass())
assert isinstance(request_data.user, User)
# get the request ReportType
rt = ReportType.objects.get(type=report_data['report_type'])
# list of users that will have access to this report
shared_users = aux.extract_users(request_data.POST.get('Groups'),
request_data.POST.get('Individuals'))
if shared_users == list() and request_data.POST.get('shared'):
shared_users = request_data.POST.getlist('shared')
# author
the_user = request_data.user
the_user.prof = UserProfile.objects.get(user=the_user)
assert isinstance(the_user.prof, UserProfile)
# target profile :
target = ComputeTarget.objects.get(pk=request_data.POST.get('target'))
assert target.id in rt.ready_id_list # TODO make a validator in the form section
# create initial instance so that we can use its db id
dbitem = Report(
_type=rt,
_name=report_data['instance_name'],
_author=the_user,
project=Project.objects.get(id=request_data.POST.get('project')),
_institute=the_user.prof.institute_info,
_breeze_stat=JobStat.INIT,
target=target,
rora_id=report_data['instance_id'])
dbitem.assemble(request_data=request_data,
shared_users=shared_users,
sections=sections)
dbitem.submit_to_cluster()
return True
def build_report(report_data, request_data, report_property, sections):
""" Assembles report home folder, configures DRMAA and R related files
and spawns a new process for reports DRMAA job on cluster.
:param report_data: report info dictionary
:type report_data: dict
:param request_data: a copy of request object
:type request_data: HTTPrequest
:param report_property: report property form
:type report_property: breezeForms.ReportPropsForm
:param sections: a list of 'Rscripts' db objects
:type sections: list
:return: True
:rtype: bool
"""
from breeze.models import Project, UserProfile, ReportType, Report, ComputeTarget
from django.contrib.auth.models import User
log = logger.getChild("build_report")
assert isinstance(log, logging.getLoggerClass())
assert isinstance(request_data.user, User)
# get the request ReportType
rt = ReportType.objects.get(type=report_data["report_type"])
# list of users that will have access to this report
shared_users = aux.extract_users(request_data.POST.get("Groups"), request_data.POST.get("Individuals"))
if shared_users == list() and request_data.POST.get("shared"):
shared_users = request_data.POST.getlist("shared")
# author
the_user = request_data.user
the_user.prof = UserProfile.objects.get(user=the_user)
assert isinstance(the_user.prof, UserProfile)
# target profile :
from django.core.exceptions import ObjectDoesNotExist
target_id = request_data.POST.get("target")
try:
# target = ComputeTarget.objects.get_ready().filter(pk=target_id)
target = ComputeTarget.objects.get(pk=target_id)
except ObjectDoesNotExist:
from django.contrib import messages
messages.add_message(request_data, messages.ERROR, "No such target %s" % target_id)
return False
if not target.is_ready:
from django.contrib import messages
messages.add_message(request_data, messages.ERROR, "target %s is either disable or not ready" % target)
return False
# target = ComputeTarget.objects.get(pk=request_data.POST.get('target'))
# if target.id not in rt.ready_id_list: # TODO make a validator in the form section
# if target not in ComputeTarget.objects.ready():
# from django.contrib import messages
# messages.add_message(request_data, messages.INFO, 'target %s is either disable or not ready' % target)
# return False
# create initial instance so that we can use its db id
dbitem = Report(
_type=rt,
_name=report_data["instance_name"],
_author=the_user,
project=Project.objects.get(id=request_data.POST.get("project")),
_institute=the_user.prof.institute_info,
_breeze_stat=JobStat.INIT,
target=target,
rora_id=report_data["instance_id"],
)
dbitem.assemble(request_data=request_data, shared_users=shared_users, sections=sections)
dbitem.submit_to_cluster()
return True