def test_cdhit_from_seqs(self): """CD_HIT should return expected seqs""" res = cdhit_from_seqs(dna_seqs, DNA, {"-c": 0.8}) self.assertEqual(res.toFasta(), dna_expected)
def test_cdhit_from_seqs_synonym(self): """CD_HIT should return expected seqs with -c synonym""" res = cdhit_from_seqs(dna_seqs, DNA, {"Similarity": 0.8}) self.assertEqual(res.toFasta(), dna_expected)
def test_cdhit_from_seqs(self): """CD_HIT should return expected seqs""" res = cdhit_from_seqs(protein_seqs, PROTEIN, {"-c": 0.8}) self.assertEqual(res.toFasta(), protein_expected)