Esempi in Python per with_relationships

Esempio n. 1

File: test_bunsen_r4.py Progetto: rbrush/bunsen

def test_read_relationship_file(spark_session):
    ancestors = with_relationships(
        spark_session, create_hierarchies(spark_session),
        'tests/resources/SNOMED_RELATIONSHIP_SAMPLE.TXT',
        '20160901').get_ancestors()

    assert set(ancestors.columns) == EXPECTED_COLUMNS

Esempio n. 2

File: test_bunsen_r4.py Progetto: datnoor/bunsen

def test_isa_snomed(spark_session):

  spark_session.sql('create database isa_snomed_ontologies')

  with_relationships(
      spark_session,
      create_hierarchies(spark_session),
      'tests/resources/SNOMED_RELATIONSHIP_SAMPLE.TXT',
      '20160901') \
    .write_to_database('isa_snomed_ontologies')

  create_value_sets(spark_session).write_to_database('isa_snomed_ontologies')

  push_valuesets(spark_session,
                 {'diabetes' : isa_snomed('73211009')},
                 database = 'isa_snomed_ontologies')

  expected = {'diabetes' : [('http://snomed.info/sct', '73211009'),
                            ('http://snomed.info/sct', '44054006')]}

  assert get_current_valuesets(spark_session) == expected