def __init__(self, strandset, base_idx_low, base_idx_high, strandset_idx):
super(CreateStrandCommand, self).__init__("create strand")
self._strandset = strandset
self._s_set_idx = strandset_idx
doc = strandset.document()
self._strand = Strand(strandset, base_idx_low, base_idx_high)
colorList = prefs.STAP_COLORS if strandset.isStaple(
) else prefs.SCAF_COLORS
color = random.choice(colorList).name()
self._new_oligo = Oligo(None, color) # redo will set part
self._new_oligo.setLength(self._strand.totalLength())
def __init__(self, strandset,
base_idx_low, base_idx_high,
color,
update_segments=True):
""" TODO: Now that parts have a UUID this could be instantiated via
a document, uuid, id_num, is_fwd, base_idx_low, ... instead of an object
to be independent of parts keeping strandsets live
"""
super(CreateStrandCommand, self).__init__("create strand")
self._strandset = strandset
doc = strandset.document()
self._strand = Strand(strandset, base_idx_low, base_idx_high)
self._new_oligo = Oligo(None, color, length=self._strand.totalLength()) # redo will set part
self.update_segments = update_segments
