def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (1|2)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['1', '2']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/human_picobirnavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/anhanga.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__, chrs,
seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/fugong/")):
ds.add_fasta_path("data/fugong/" + f, relative=True)
sys.modules[__name__] = ds
import sys
from catch.datasets import GenomesDatasetMultiChrom
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (1|10|11|12|2|3|4|5|6|7|8|9)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['1', '10', '11', '12', '2', '3', '4', '5', '6', '7', '8', '9']]
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/colorado_tick_fever.fasta.gz", relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/capim_orthobunyavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__, chrs,
seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/tete/")):
ds.add_fasta_path("data/tete/" + f, relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/bhanja.fasta.gz", relative=True)
sys.modules[__name__] = ds
import sys
from catch.datasets import GenomesDatasetMultiChrom
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/serra_do_navio_mammarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/mobala_mammarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__, chrs,
seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/guaroa/")):
ds.add_fasta_path("data/guaroa/" + f, relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (1|2|3|4|5|6)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['1', '2', '3', '4', '5', '6']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/thogoto_thogotovirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
import sys
from catch.datasets import GenomesDatasetMultiChrom
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/flexal_mammarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/sathuperi_orthobunyavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/guanarito_mammarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os.path import join
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/bruges/")):
ds.add_fasta_path("data/bruges/" + f, relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/thailand_orthohantavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/california_reptarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
c = re.compile(r'\[segment (1|2|3|4|5|6|7|8)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['1', '2', '3', '4', '5', '6', '7', '8']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
return m.group(1)
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
for seg in ['1', '2', '3', '4', '5', '6', '7', '8']:
ds.add_fasta_path("data/influenza_a_segment" + seg + ".fasta.gz",
relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/ryukyu_mammarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
import re
c = re.compile(r'\[segment (1|10|11|2|3|4|5|6|7|8|9)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = [
"segment_" + seg
for seg in ['1', '10', '11', '2', '3', '4', '5', '6', '7', '8', '9']
]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/rotavirus_g.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os.path import join
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/thottapalayam/")):
ds.add_fasta_path("data/thottapalayam/" + f, relative=True)
sys.modules[__name__] = ds
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
return m.group(1)
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/rift_valley_fever.fasta", relative=True)
sys.modules[__name__] = ds
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__, chrs,
seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/chapare/")):
ds.add_fasta_path("data/chapare/" + f, relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/imjin_orthohantavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__, chrs,
seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/shamonda/")):
ds.add_fasta_path("data/shamonda/" + f, relative=True)
sys.modules[__name__] = ds
import sys
from catch.datasets import GenomesDatasetMultiChrom
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/arumowot.fasta.gz", relative=True)
sys.modules[__name__] = ds
import sys
from catch.datasets import GenomesDatasetMultiChrom
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'S']]
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/whitewater_arroyo_mammarenavirus.fasta.gz", relative=True)
sys.modules[__name__] = ds
import sys
from catch.datasets import GenomesDatasetMultiChrom
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise Exception("Unknown or invalid segment in header %s" % header)
seg = m.group(1)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
if not m:
raise Exception("Unknown genome in header %s" % header)
return m.group(1)
chrs = ["segment_" + seg for seg in ['L', 'M', 'S']]
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__,
chrs, seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/ambe.fasta.gz", relative=True)
sys.modules[__name__] = ds
from os import listdir
import sys
from catch.datasets import GenomesDatasetMultiChrom
__author__ = 'Hayden Metsky <*****@*****.**>'
chrs = ["segment_" + seg for seg in ['L', 'S']]
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
ds = GenomesDatasetMultiChrom(__name__, __file__, __spec__, chrs,
seq_header_to_chr)
for f in listdir(join(dirname(__file__), "data/pirital/")):
ds.add_fasta_path("data/pirital/" + f, relative=True)
sys.modules[__name__] = ds
def seq_header_to_chr(header):
import re
c = re.compile(r'\[segment (L|M|S)\]')
m = c.search(header)
if not m:
raise ValueError("Unknown segment in header %s" % header)
seg = m.group(1)
valid_segs = ['L', 'M', 'S']
if seg not in valid_segs:
raise ValueError("Unknown segment %s" % seg)
return "segment_" + seg
def seq_header_to_genome(header):
import re
c = re.compile(r'\[genome (.+)\]')
m = c.search(header)
return m.group(1)
ds = GenomesDatasetMultiChrom(__name__,
__file__,
__spec__,
chrs,
seq_header_to_chr,
seq_header_to_genome=seq_header_to_genome)
ds.add_fasta_path("data/seoul.fasta", relative=True)
sys.modules[__name__] = ds
