def check_valid(self):
"""Performs validity check and sets self.valid"""
self.valid = False
if self.type not in RECIPIENT_TYPE.values():
self.report_error("missing/invalid type: {}".format(self.type))
return
if not self.primary_idnum and self.using_hl7():
self.report_error("missing primary_idnum")
return
if self.primary_idnum < 1 or self.primary_idnum > NUMBER_OF_IDNUMS:
self.report_error("invalid primary_idnum: {}".format(
self.primary_idnum))
return
if self.primary_idnum and self.require_idnum_mandatory:
# (a) ID number must be mandatory in finalized records
if not cc_policy.is_idnum_mandatory_in_finalize_policy(
self.primary_idnum):
self.report_error(
"primary_idnum ({}) not mandatory in finalizing policy, "
"but needs to be".format(self.primary_idnum))
return
if not self.finalized_only:
# (b) ID number must also be mandatory in uploaded,
# non-finalized records
if not cc_policy.is_idnum_mandatory_in_upload_policy(
self.primary_idnum):
self.report_error(
"primary_idnum ({}) not mandatory in upload policy, "
"but needs to be".format(self.primary_idnum))
return
if not self.task_format or \
self.task_format not in [
VALUE.OUTPUTTYPE_PDF,
VALUE.OUTPUTTYPE_HTML,
VALUE.OUTPUTTYPE_XML,
]:
self.report_error(
"missing/invalid task_format: {}".format(self.task_format))
return
if not self.task_format == VALUE.OUTPUTTYPE_XML:
self.xml_field_comments = None
# HL7
if self.type == RECIPIENT_TYPE.HL7:
if not self.divert_to_file:
if not self.host:
self.report_error("missing host")
return
if not self.port or self.port <= 0:
self.report_error(
"missing/invalid port: {}".format(self.port))
return
if not self.idnum_type_list[self.primary_idnum - 1]:
self.report_error(
"missing IDNUM_TYPE_{} (for primary ID)".format(
self.primary_idnum))
return
# File
if self.type == RECIPIENT_TYPE.FILE:
if not self.patient_spec_if_anonymous:
self.report_error("missing patient_spec_if_anonymous")
return
if not self.patient_spec:
self.report_error("missing patient_spec")
return
if not cc_filename.patient_spec_for_filename_is_valid(
self.patient_spec):
self.report_error(
"invalid patient_spec: {}".format(self.patient_spec))
return
if not self.filename_spec:
self.report_error("missing filename_spec")
return
if not cc_filename.filename_spec_is_valid(self.filename_spec):
self.report_error(
"invalid filename_spec: {}".format(self.filename_spec))
return
# RiO metadata
if self.rio_metadata:
if not (1 <= self.rio_idnum <= NUMBER_OF_IDNUMS):
# ... test handles None values; 1 < None < 3 is False
self.report_error(
"invalid rio_idnum: {}".format(self.rio_idnum))
return
if (not self.rio_uploading_user
or " " in self.rio_uploading_user
or len(self.rio_uploading_user) > RIO_MAX_USER_LEN):
self.report_error(
"missing/invalid rio_uploading_user: {} (must be "
"present, contain no spaces, and max length "
"{})".format(
self.rio_uploading_user,
RIO_MAX_USER_LEN))
return
if not self.rio_document_type:
self.report_error("missing rio_document_type")
return
# This section would be BETTER with a try/raise/except block, rather
# than a bunch of return statements.
# Done
self.valid = True
def set_webview(self, environ, config):
# ---------------------------------------------------------------------
# Delayed imports
# ---------------------------------------------------------------------
import cgi
import operator
import os
import urllib
import cc_filename
import cc_html # caution, circular import
import cc_policy
import cc_namedtuples
import cc_recipdef
import cc_version
logger = cc_logger.logger
# ---------------------------------------------------------------------
# Read from the environment
# ---------------------------------------------------------------------
# http://www.zytrax.com/tech/web/env_var.htm
# Apache standard CGI variables:
self.SCRIPT_NAME = environ.get("SCRIPT_NAME", "")
self.SERVER_NAME = environ.get("SERVER_NAME")
# Reconstruct URL:
# http://www.python.org/dev/peps/pep-0333/#url-reconstruction
url = environ.get("wsgi.url_scheme", "") + "://"
if environ.get("HTTP_HOST"):
url += environ.get("HTTP_HOST")
else:
url += environ.get("SERVER_NAME", "")
if environ.get("wsgi.url_scheme") == "https":
if environ.get("SERVER_PORT") != "443":
url += ":" + environ.get("SERVER_PORT", "")
else:
if environ.get("SERVER_PORT") != "80":
url += ":" + environ.get("SERVER_PORT", "")
url += urllib.quote(environ.get("SCRIPT_NAME", ""))
url += urllib.quote(environ.get("PATH_INFO", ""))
# But not the query string:
# if environ.get("QUERY_STRING"):
# url += "?" + environ.get("QUERY_STRING")
self.SCRIPT_PUBLIC_URL_ESCAPED = cgi.escape(url)
# ---------------------------------------------------------------------
# Read from the config file:
# ---------------------------------------------------------------------
section = CONFIG_FILE_MAIN_SECTION
self.MYSQL = get_config_parameter(config, section, "MYSQL", str, DEFAULT_MYSQL)
self.MYSQLDUMP = get_config_parameter(config, section, "MYSQLDUMP", str, DEFAULT_MYSQLDUMP)
self.LOCAL_INSTITUTION_URL = get_config_parameter(
config, section, "LOCAL_INSTITUTION_URL", str, DEFAULT_LOCAL_INSTITUTION_URL
)
# note order dependency: RESOURCES_DIRECTORY, LOCAL_LOGO_FILE_ABSOLUTE
self.RESOURCES_DIRECTORY = get_config_parameter(
config, section, "RESOURCES_DIRECTORY", str, DEFAULT_RESOURCES_DIRECTORY
)
self.LOCAL_LOGO_FILE_ABSOLUTE = get_config_parameter(
config,
section,
"LOCAL_LOGO_FILE_ABSOLUTE",
str,
os.path.join(self.RESOURCES_DIRECTORY, LOCAL_LOGO_FILE_WEBREF),
)
self.INTROSPECTION_DIRECTORY = get_config_parameter(
config, section, "INTROSPECTION_DIRECTORY", str, DEFAULT_INTROSPECTION_DIRECTORY
)
self.INTROSPECTION = get_config_parameter_boolean(config, section, "INTROSPECTION", True)
self.HL7_LOCKFILE = get_config_parameter(config, section, "HL7_LOCKFILE", str, None)
self.SUMMARY_TABLES_LOCKFILE = get_config_parameter(config, section, "SUMMARY_TABLES_LOCKFILE", str, None)
self.PASSWORD_CHANGE_FREQUENCY_DAYS = get_config_parameter(
config, section, "PASSWORD_CHANGE_FREQUENCY_DAYS", int, DEFAULT_PASSWORD_CHANGE_FREQUENCY_DAYS
)
self.LOCKOUT_THRESHOLD = get_config_parameter(
config, section, "LOCKOUT_THRESHOLD", int, DEFAULT_LOCKOUT_THRESHOLD
)
self.LOCKOUT_DURATION_INCREMENT_MINUTES = get_config_parameter(
config, section, "LOCKOUT_DURATION_INCREMENT_MINUTES", int, DEFAULT_LOCKOUT_DURATION_INCREMENT_MINUTES
)
self.DISABLE_PASSWORD_AUTOCOMPLETE = get_config_parameter_boolean(
config, section, "DISABLE_PASSWORD_AUTOCOMPLETE", True
)
self.PATIENT_SPEC_IF_ANONYMOUS = get_config_parameter(
config, section, "PATIENT_SPEC_IF_ANONYMOUS", str, "anonymous"
)
self.PATIENT_SPEC = get_config_parameter(config, section, "PATIENT_SPEC", str, None)
self.TASK_FILENAME_SPEC = get_config_parameter(config, section, "TASK_FILENAME_SPEC", str, None)
self.TRACKER_FILENAME_SPEC = get_config_parameter(config, section, "TRACKER_FILENAME_SPEC", str, None)
self.CTV_FILENAME_SPEC = get_config_parameter(config, section, "CTV_FILENAME_SPEC", str, None)
self.WEBVIEW_LOGLEVEL = get_config_parameter_loglevel(config, section, "WEBVIEW_LOGLEVEL", logging.INFO)
logger.setLevel(self.WEBVIEW_LOGLEVEL)
self.SEND_ANALYTICS = get_config_parameter_boolean(config, section, "SEND_ANALYTICS", True)
self.EXPORT_CRIS_DATA_DICTIONARY_TSV_FILE = get_config_parameter(
config, section, "EXPORT_CRIS_DATA_DICTIONARY_TSV_FILE", str, None
)
# http://stackoverflow.com/questions/335695/lists-in-configparser
try:
hl7_items = config.items(CONFIG_FILE_RECIPIENTLIST_SECTION)
for key, recipientdef_name in hl7_items:
logger.debug(u"HL7 config: key={}, recipientdef_name=" "{}".format(key, recipientdef_name))
h = cc_recipdef.RecipientDefinition(config, recipientdef_name)
if h.valid:
self.HL7_RECIPIENT_DEFS.append(h)
except ConfigParser.NoSectionError:
logger.info("No config file section [{}]".format(CONFIG_FILE_RECIPIENTLIST_SECTION))
# ---------------------------------------------------------------------
# Built from the preceding:
# ---------------------------------------------------------------------
self.INTROSPECTION_FILES = []
if self.INTROSPECTION:
rootdir = self.INTROSPECTION_DIRECTORY
for d in INTROSPECTABLE_DIRECTORIES:
searchdir = os.sep.join([rootdir, d]) if d else rootdir
for fname in os.listdir(searchdir):
junk, ext = os.path.splitext(fname)
if ext not in INTROSPECTABLE_EXTENSIONS:
continue
fullpath = os.sep.join([searchdir, fname])
prettypath = os.sep.join([d, fname]) if d else fname
self.INTROSPECTION_FILES.append(
cc_namedtuples.IntrospectionFileDetails(
fullpath=fullpath, prettypath=prettypath, searchterm=fname, ext=ext
)
)
self.INTROSPECTION_FILES = sorted(self.INTROSPECTION_FILES, key=operator.attrgetter("prettypath"))
# Cache tokenized ID policies
cc_policy.tokenize_upload_id_policy(self.ID_POLICY_UPLOAD_STRING)
cc_policy.tokenize_finalize_id_policy(self.ID_POLICY_FINALIZE_STRING)
# Valid?
if not cc_policy.upload_id_policy_valid():
raise RuntimeError("UPLOAD_POLICY invalid in config")
if not cc_policy.finalize_id_policy_valid():
raise RuntimeError("FINALIZE_POLICY invalid in config")
if self.RESOURCES_DIRECTORY is not None:
self.CAMCOPS_STRINGS_FILE_ABSOLUTE = os.path.join(self.RESOURCES_DIRECTORY, CAMCOPS_STRINGS_FILE)
self.CAMCOPS_LOGO_FILE_ABSOLUTE = os.path.join(self.RESOURCES_DIRECTORY, CAMCOPS_LOGO_FILE_WEBREF)
# Note: HTML4 uses <img ...>; XHTML uses <img ... />;
# HTML5 is happy with <img ... />
# IE float-right problems: http://stackoverflow.com/questions/1820007
# Tables are a nightmare in IE (table max-width not working unless you
# also specify it for image size, etc.)
self.WEB_LOGO = u"""
<div class="web_logo_header">
<a href="{}"><img class="logo_left" src="{}" alt="" /></a>
<a href="{}"><img class="logo_right" src="{}" alt="" /></a>
</div>
""".format(
self.SCRIPT_NAME, CAMCOPS_LOGO_FILE_WEBREF, self.LOCAL_INSTITUTION_URL, LOCAL_LOGO_FILE_WEBREF
)
self.WEBSTART = cc_html.WEB_HEAD + self.WEB_LOGO
if cc_version.PDF_ENGINE in ["weasyprint", "pdfkit"]:
# weasyprint: div with floating img does not work properly
self.PDF_LOGO_LINE = u"""
<div class="pdf_logo_header">
<table>
<tr>
<td class="image_td">
<img class="logo_left" src="file://{}" />
</td>
<td class="centregap_td"></td>
<td class="image_td">
<img class="logo_right" src="file://{}" />
</td>
</tr>
</table>
</div>
""".format(
self.CAMCOPS_LOGO_FILE_ABSOLUTE, self.LOCAL_LOGO_FILE_ABSOLUTE
)
elif cc_version.PDF_ENGINE in ["pdfkit"]:
self.PDF_LOGO_LINE = u"""
<div class="pdf_logo_header">
<table>
<tr>
<td class="image_td">
<img class="logo_left" src="file://{}" />
</td>
<td class="centregap_td"></td>
<td class="image_td">
<img class="logo_right" src="file://{}" />
</td>
</tr>
</table>
</div>
""".format(
self.CAMCOPS_LOGO_FILE_ABSOLUTE, self.LOCAL_LOGO_FILE_ABSOLUTE
)
# self.PDF_LOGO_LINE = u"""
# <div class="pdf_logo_header">
# <img class="logo_left" src="file://{}" />
# <img class="logo_right" src="file://{}" />
# </div>
# """.format(
# self.CAMCOPS_LOGO_FILE_ABSOLUTE,
# self.LOCAL_LOGO_FILE_ABSOLUTE,
# )
elif cc_version.PDF_ENGINE in ["xhtml2pdf"]:
# xhtml2pdf
# hard to get logos positioned any other way than within a table
self.PDF_LOGO_LINE = u"""
<div class="header">
<table class="noborder">
<tr class="noborder">
<td class="noborderphoto" width="45%">
<img src="file://{}" height="{}"
align="left" />
</td>
<td class="noborderphoto" width="10%"></td>
<td class="noborderphoto" width="45%">
<img src="file://{}" height="{}"
align="right" />
</td>
</tr>
</table>
</div>
""".format(
self.CAMCOPS_LOGO_FILE_ABSOLUTE,
cc_html.PDF_LOGO_HEIGHT,
self.LOCAL_LOGO_FILE_ABSOLUTE,
cc_html.PDF_LOGO_HEIGHT,
)
else:
raise AssertionError("Invalid PDF engine")
if not self.PATIENT_SPEC_IF_ANONYMOUS:
raise RuntimeError("Blank PATIENT_SPEC_IF_ANONYMOUS in [server] " "section of config file")
if not self.PATIENT_SPEC:
raise RuntimeError("Missing/blank PATIENT_SPEC in [server] section" " of config file")
if not cc_filename.patient_spec_for_filename_is_valid(self.PATIENT_SPEC):
raise RuntimeError("Invalid PATIENT_SPEC in [server] section of " "config file")
if not self.TASK_FILENAME_SPEC:
raise RuntimeError("Missing/blank TASK_FILENAME_SPEC in " "[server] section of config file")
if not cc_filename.filename_spec_is_valid(self.TASK_FILENAME_SPEC):
raise RuntimeError("Invalid TASK_FILENAME_SPEC in " "[server] section of config file")
if not self.TRACKER_FILENAME_SPEC:
raise RuntimeError("Missing/blank TRACKER_FILENAME_SPEC in " "[server] section of config file")
if not cc_filename.filename_spec_is_valid(self.TRACKER_FILENAME_SPEC):
raise RuntimeError("Invalid TRACKER_FILENAME_SPEC in " "[server] section of config file")
if not self.CTV_FILENAME_SPEC:
raise RuntimeError("Missing/blank CTV_FILENAME_SPEC in " "[server] section of config file")
if not cc_filename.filename_spec_is_valid(self.CTV_FILENAME_SPEC):
raise RuntimeError("Invalid CTV_FILENAME_SPEC in " "[server] section of config file")
