def get_image(self, coordinate):
index = 0
zslice = coordinate.zslice
if self.has_multi_images and self.multi_image == self.MULTIIMAGE_USE_ZSLICE:
index = zslice - 1
zslice = None
filename_rel = self.dimension_lookup[coordinate.position][coordinate.time][coordinate.channel][zslice]
filename_abs = os.path.join(self.path, filename_rel)
# make sure no back-slashes are left in the path
filename_abs = filename_abs.replace("\\", "/")
if self.meta_data.pixel_type == PixelType.name(PixelType.Uint8):
image = ccore.readImage(filename_abs, index)
elif self.meta_data.pixel_type == PixelType.name(PixelType.Uint16):
image = ccore.readImageUInt16(filename_abs, index)
else:
image = ccore.readImageUInt16(filename_abs, index)
return image
def set_image_info(self, info):
self.dim_x = info.width
self.dim_y = info.height
self.real_image_width = info.width
self.real_image_height = info.height
# ccore returns upper case type names, numpy is lower case
ptype = info.pixel_type.lower()
if not PixelType.is_valid(ptype):
raise TypeError('Pixel type is not understood')
self.pixel_type = ptype
def set_image_info(self, info):
self.dim_x = info.width
self.dim_y = info.height
self.real_image_width = info.width
self.real_image_height = info.height
# ccore returns upper case type names, numpy is lower case
ptype = info.pixel_type.lower()
if not PixelType.is_valid(ptype):
raise TypeError('Pixel type is not understood')
self.pixel_type = ptype
def get_image(self, coordinate):
index = 0
zslice = coordinate.zslice
if (self.has_multi_images
and self.multi_image == self.MULTIIMAGE_USE_ZSLICE):
index = zslice - 1
zslice = None
filename_rel = self.dimension_lookup[coordinate.position] \
[coordinate.time] \
[coordinate.channel] \
[zslice]
filename_abs = os.path.join(self.path, filename_rel)
# make sure no back-slashes are left in the path
filename_abs = filename_abs.replace('\\', '/')
if self.meta_data.pixel_type == PixelType.name(PixelType.Uint8):
image = ccore.readImage(filename_abs, index)
elif self.meta_data.pixel_type == PixelType.name(PixelType.Uint16):
image = ccore.readImageUInt16(filename_abs, index)
else:
image = ccore.readImageUInt16(filename_abs, index)
return image
def pixel_range(self):
return PixelType.range(self.pixel_type)
def pixel_range(self):
return PixelType.range(self.pixel_type)
