def test_gpcca_coarse_T_xtick_rot(self, mc: GPCCA, fpath: str):
mc.plot_coarse_T(xtick_rotation=0, dpi=DPI, save=fpath)
def test_gpcca_coarse_T_no_annot(self, mc: GPCCA, fpath: str):
mc.plot_coarse_T(annotate=False, dpi=DPI, save=fpath)
def test_gpcca_coarse_T_cmap(self, mc: GPCCA, fpath: str):
mc.plot_coarse_T(cmap=cm.inferno, dpi=DPI, save=fpath)
def test_scvelo_gpcca_main_states_time(self, mc: GPCCA, fpath: str):
mc.plot_main_states(mode="time", dpi=DPI, save=fpath)
def test_gpcca_coarse_T_no_cbar(self, mc: GPCCA, fpath: str):
mc.plot_coarse_T(show_cbar=False, dpi=DPI, save=fpath)
def test_scvelo_gpcca_meta_states_cluster_key(self, mc: GPCCA, fpath: str):
mc.plot_metastable_states(cluster_key="clusters", dpi=DPI, save=fpath)
def test_scvelo_gpcca_meta_states_cmap(self, mc: GPCCA, fpath: str):
mc.plot_metastable_states(cmap=cm.inferno,
same_plot=False,
dpi=DPI,
save=fpath)
def test_gpcca_schur_matrix_cmap(self, mc: GPCCA, fpath: str):
mc.plot_schur_matrix(cmap=cm.inferno, dpi=DPI, save=fpath)
def test_scvelo_gpcca_schur_emb_use_2(self, mc: GPCCA, fpath: str):
mc.plot_schur_embedding(use=1, dpi=DPI, save=fpath)
def test_gpcca_schur_matrix(self, mc: GPCCA, fpath: str):
mc.plot_schur_matrix(dpi=DPI, save=fpath)
def test_gpcca_schur_matrix_title(self, mc: GPCCA, fpath: str):
mc.plot_schur_matrix(title="foobar", dpi=DPI, save=fpath)
def test_gpcca_spectrum_title(self, mc: GPCCA, fpath: str):
mc.plot_spectrum(title="foobar", real_only=True, dpi=DPI, save=fpath)
def test_gpcca_real_spectrum(self, mc: GPCCA, fpath: str):
mc.plot_spectrum(real_only=True, dpi=DPI, save=fpath)
def test_gpcca_complex_spectrum(self, mc: GPCCA, fpath: str):
mc.plot_spectrum(real_only=False, dpi=DPI, save=fpath)
def test_scvelo_gpcca_meta_states_lineages(self, mc: GPCCA, fpath: str):
mc.plot_metastable_states(lineages=["0"], dpi=DPI, save=fpath)
def test_scvelo_gpcca_schur_emb_abs(self, mc: GPCCA, fpath: str):
mc.plot_schur_embedding(abs_value=True, dpi=DPI, save=fpath)
def test_scvelo_gpcca_meta_states_n_cells(self, mc: GPCCA, fpath: str):
mc.plot_metastable_states(n_cells=5, dpi=DPI, save=fpath)
def test_scvelo_gpcca_schur_cluster_key(self, mc: GPCCA, fpath: str):
mc.plot_schur_embedding(cluster_key="clusters", dpi=DPI, save=fpath)
def test_scvelo_gpcca_meta_states_no_same_plot(self, mc: GPCCA,
fpath: str):
mc.plot_metastable_states(same_plot=False, dpi=DPI, save=fpath)
def test_gpcca_coarse_T_init_dist(self, mc: GPCCA, fpath: str):
mc.plot_coarse_T(show_initial_dist=True,
show_stationary_dist=False,
dpi=DPI,
save=fpath)
def test_scvelo_gpcca_meta_states_title(self, mc: GPCCA, fpath: str):
mc.plot_metastable_states(title="foobar", dpi=DPI, save=fpath)
def test_scvelo_gpcca_main_states(self, mc: GPCCA, fpath: str):
mc.plot_main_states(dpi=DPI, save=fpath)