def test_extract_data_normal_run_raw(self, adata: AnnData):
raw = _extract_data(adata, use_raw=True, layer="Ms")
assert raw is adata.raw.X
def test_extract_data_normal_run_layer(self, adata: AnnData):
ms = _extract_data(adata, layer="Ms", use_raw=False)
assert ms is adata.layers["Ms"]
def test_extract_data_normal_run(self, adata: AnnData):
X = _extract_data(adata, use_raw=False)
assert X is adata.X
def test_extract_data_invalid_layer(self, adata: AnnData):
with pytest.raises(KeyError):
_extract_data(adata, layer="foo", use_raw=False)
def test_extract_data_raw_None(self, adata: AnnData):
adata = AnnData(adata.X, raw=None)
with pytest.raises(ValueError):
_extract_data(adata, use_raw=True)
def test_extract_data_wrong_type(self):
with pytest.raises(TypeError):
_extract_data(None)