def __init__(self, tmpdir):
self._file_system = cerulean.LocalFileSystem()
base_dir_path = tmpdir / 'remote_basedir'
base_dir_path.mkdir()
self._base_dir = self._file_system / str(base_dir_path)
exchange_path = tmpdir / 'local_exchange'
exchange_path.mkdir()
self._exchange_path = str(exchange_path)
def get_store_location_service(self) -> cerulean.Path:
"""
Returns the file exchange location access point for the service.
Returns:
The local base directory for file exchange with the client.
Raises:
KeyError: The location was not set.
"""
url = self._config['client-file-exchange']['store-location-service']
urlparts = urllib.parse.urlparse(url)
if urlparts.scheme == 'file':
return cerulean.LocalFileSystem() / urlparts.path
elif urlparts.scheme == 'http':
return cerulean.WebdavFileSystem(url) / ''
else:
raise RuntimeError('Config store-location-service contains an'
' invalid scheme. Use file:// or http://.')
import cerulean
from cerise.back_end.job_planner import JobPlanner
from cerise.test.fixture_jobs import (BrokenJob, MissingInputJob,
NoSuchStepJob, PassJob, SlowJob)
lfs = cerulean.LocalFileSystem()
def test_job_planner_init(mock_config, mock_store_resolved, local_api_dir):
store, _ = mock_store_resolved
planner = JobPlanner(store, lfs / str(local_api_dir))
requirements = planner._steps_requirements
assert requirements['test/wc.cwl']['num_cores'] == 0
assert requirements['test/hostname.cwl']['num_cores'] == 2
assert requirements['test/echo.cwl']['num_cores'] == 0
assert requirements['test/sleep.cwl']['num_cores'] == 0
assert requirements['test/wc.cwl']['time_limit'] == 60
assert requirements['test/hostname.cwl']['time_limit'] == 0
assert requirements['test/echo.cwl']['time_limit'] == 0
assert requirements['test/sleep.cwl']['time_limit'] == 0
def test_plan_job(mock_config, mock_store_resolved, local_api_dir):
store, job_fixture = mock_store_resolved
planner = JobPlanner(store, lfs / str(local_api_dir))
def get_store_location_service(self):
return cerulean.LocalFileSystem() / str(self._exchange_path)