def testRunRulesMoleculeCH4MinOK(self):
ver = Verification("test/moleculeCH4.IN.xml")
#printRules(ver.rules)
tree = ver.run(bad = True)
xsd.assertValid(tree)
#Need test RuleT03
self.assertEquals(etree.tostring(objectify.fromstring(open("test/moleculeCH4.OUT.MIN.xml").read()), pretty_print = True), etree.tostring(tree, pretty_print = True))
def testRunRulesTransition3MaxOK(self):
rulesParser = RulesParser()
rulesParser.useRules = set([Rule("atomRuleT01", None), Rule("atomRuleT02", None)])
ver = Verification("test/transition3OK.IN.xml", rulesParser.getRules())
tree = ver.run(report = True, bad = None)
xsd.assertValid(tree)
self.assertEquals(etree.tostring(objectify.fromstring(open("test/transition3OK.OUT.MAX.xml").read()), pretty_print = True), etree.tostring(tree, pretty_print = True))
def testDelRules(self):
rulesParser = RulesParser()
rulesParser.delRules = set([Rule("nltcsRuleT02", None)])
ver = Verification("test/moleculeH2O.IN.xml", rulesParser.getRules())
tree = ver.run()
xsd.assertValid(tree)
numberElements = tree.xpath('//xsams:NumberOfVerificationByRule', namespaces={"xsams":check.XSAMS_NS})
self.assertEquals(3, len(numberElements))
def testRunRulesMoleculeCO2MinOK(self):
#rules = RulesParser().getRules(only={"ltcsRuleS04":{}})
rules = None
ver = Verification("test/moleculeCO2.IN.xml", rules = rules)
#printRules(ver.rules)
tree = ver.run(report = False, bad = True)
xsd.assertValid(tree)
self.assertEquals(etree.tostring(objectify.fromstring(open("test/moleculeCO2.OUT.MIN.xml").read()), pretty_print = True), etree.tostring(tree, pretty_print = True))
def testUseOnlyRules(self):
rulesParser = RulesParser()
rulesParser.useRules = {Rule("nltcsRuleT02", None), Rule("nltcsRuleT03", None)}
ver = Verification("test/moleculeH2O.IN.xml", rulesParser.getRules())
tree = ver.run()
xsd.assertValid(tree)
numberElements = tree.xpath('//xsams:NumberOfVerificationByRule', namespaces={"xsams":XSAMS_NS})
self.assertEquals(2, len(numberElements))
def testDelRules(self):
rulesParser = RulesParser()
rulesParser.delRules = set([Rule("nltcsRuleT02", None)])
ver = Verification("test/moleculeH2O.IN.xml", rulesParser.getRules())
tree = ver.run()
xsd.assertValid(tree)
numberElements = tree.xpath('//xsams:NumberOfVerificationByRule',
namespaces={"xsams": XSAMS_NS})
self.assertEquals(3, len(numberElements))
def testRunRulesMoleculeN2OMinOK(self):
ver = Verification("test/moleculeN2O.IN.xml")
tree = ver.run(bad=True)
xsd.assertValid(tree)
self.assertEquals(
etree.tostring(objectify.fromstring(
open("test/moleculeN2O.OUT.MIN.xml").read()),
pretty_print=True),
etree.tostring(tree, pretty_print=True))
def testRunRulesTransition3MinOK(self):
ver = Verification("test/transition3OK.IN.xml")
tree = ver.run(report=False, bad=True)
xsd.assertValid(tree)
self.assertEquals(
etree.tostring(objectify.fromstring(
open("test/transition3OK.OUT.MIN.xml").read()),
pretty_print=True),
etree.tostring(tree, pretty_print=True))
def testAddRules(self):
rulesParser = RulesParser()
rulesParser.addRules = set([Rule("a", "nltcs:J < 9")])
ver = Verification("test/moleculeH2O.IN.xml", rulesParser.getRules())
tree = ver.run()
xsd.assertValid(tree)
numberElements = tree.xpath('//xsams:NumberOfVerificationByRule[@name = "aRuleS01"]', namespaces={"xsams":check.XSAMS_NS})
self.assertEquals(1, len(numberElements))
for numberElement in numberElements:
self.assertEquals("6", numberElement.attrib["correct"])
self.assertEquals("3", numberElement.attrib["incorrect"])
def testRunRulesMoleculeCO2MinOK(self):
#rules = RulesParser().getRules(only={"ltcsRuleS04":{}})
rules = None
ver = Verification("test/moleculeCO2.IN.xml", rules=rules)
#printRules(ver.rules)
tree = ver.run(report=False, bad=True)
xsd.assertValid(tree)
self.assertEquals(
etree.tostring(objectify.fromstring(
open("test/moleculeCO2.OUT.MIN.xml").read()),
pretty_print=True),
etree.tostring(tree, pretty_print=True))
def testRunRulesTransition3MaxOK(self):
rulesParser = RulesParser()
rulesParser.useRules = set(
[Rule("atomRuleT01", None),
Rule("atomRuleT02", None)])
ver = Verification("test/transition3OK.IN.xml", rulesParser.getRules())
tree = ver.run(report=True, bad=None)
xsd.assertValid(tree)
self.assertEquals(
etree.tostring(objectify.fromstring(
open("test/transition3OK.OUT.MAX.xml").read()),
pretty_print=True),
etree.tostring(tree, pretty_print=True))
def testAddRules(self):
rulesParser = RulesParser()
rulesParser.addRules = set([Rule("a", "nltcs:J < 9")])
ver = Verification("test/moleculeH2O.IN.xml", rulesParser.getRules())
tree = ver.run()
xsd.assertValid(tree)
numberElements = tree.xpath(
'//xsams:NumberOfVerificationByRule[@name = "aRuleS01"]',
namespaces={"xsams": XSAMS_NS})
self.assertEquals(1, len(numberElements))
for numberElement in numberElements:
self.assertEquals("5", numberElement.attrib["correct"])
self.assertEquals("3", numberElement.attrib["incorrect"])
def testRunRulesTransition1MinOK(self):
rulesParser = RulesParser()
ruleT02 = rulesParser.getRule("atomRuleT02").copy()
ruleT02.name = "atomRuleT02F"
ruleT02.forInChIList = [re.escape("InChI=1S/Fe/q+3/")]
rulesParser.useRules.add(ruleT02)
ver = Verification("test/transition1OK.IN.xml", rulesParser.getRules())
#printRules(ver.rules)
tree = ver.run(report = False, bad = True)
#with self.assertRaisesRegexp(etree.DocumentInvalid, "Element '{%s}atomRuleT02F': This element is not expected." % XSAMS_NS):
xsd.assertValid(tree)
#etree.parse("test/transition1OK.OUT.MIN.xml", etree.XMLParser(remove_blank_text=True))
#objectify.fromstring(open("test/transition1OK.OUT.MIN.xml").read())
self.assertEquals(etree.tostring(objectify.fromstring(open("test/transition1OK.OUT.MIN.xml").read()), pretty_print = True), etree.tostring(tree, pretty_print = True))
def testRunRulesMoleculeCOGoodOK(self):
tree = Verification("test/moleculeCO.IN.xml").run(bad=False)
xsd.assertValid(tree)
self.assertEquals(
etree.tostring(objectify.fromstring(
open("test/moleculeCO.OUT.GOOD.xml").read()),
pretty_print=True),
etree.tostring(tree, pretty_print=True))
def testRunRulesTransition1MinOK(self):
rulesParser = RulesParser()
ruleT02 = rulesParser.getRule("atomRuleT02").copy()
ruleT02.name = "atomRuleT02F"
ruleT02.forInChIList = [re.escape("InChI=1S/Fe/q+3/")]
rulesParser.useRules.add(ruleT02)
ver = Verification("test/transition1OK.IN.xml", rulesParser.getRules())
#printRules(ver.rules)
tree = ver.run(report=False, bad=True)
#with self.assertRaisesRegexp(etree.DocumentInvalid, "Element '{%s}atomRuleT02F': This element is not expected." % XSAMS_NS):
xsd.assertValid(tree)
#etree.parse("test/transition1OK.OUT.MIN.xml", etree.XMLParser(remove_blank_text=True))
#objectify.fromstring(open("test/transition1OK.OUT.MIN.xml").read())
self.assertEquals(
etree.tostring(objectify.fromstring(
open("test/transition1OK.OUT.MIN.xml").read()),
pretty_print=True),
etree.tostring(tree, pretty_print=True))
def testRunRulesTransition3MinOK(self):
ver = Verification("test/transition3OK.IN.xml")
tree = ver.run(report = False, bad = True)
xsd.assertValid(tree)
self.assertEquals(etree.tostring(objectify.fromstring(open("test/transition3OK.OUT.MIN.xml").read()), pretty_print = True), etree.tostring(tree, pretty_print = True))
def testRunRulesMoleculeN2OMinOK(self):
ver = Verification("test/moleculeN2O.IN.xml")
tree = ver.run(bad = True)
xsd.assertValid(tree)
self.assertEquals(etree.tostring(objectify.fromstring(open("test/moleculeN2O.OUT.MIN.xml").read()), pretty_print = True), ver.getXML())
