def test_get_image_stats_summary_output_compute_true_one_image(self):
temp_dir = tempfile.mkdtemp()
try:
im = Image.new('L', (10, 10))
iname = os.path.join(temp_dir, '1.png')
im.save(iname)
expsize = os.path.getsize(iname)
con = CHMConfig(temp_dir, './model', './outdir', '500x500',
'20x20')
cfig = configparser.ConfigParser()
cfig.add_section('1')
cfig.set('1', 'hi', 'val')
cfig.add_section('2')
cfig.set('2', 'hi', 'val')
con.set_config(cfig)
mfig = configparser.ConfigParser()
mfig.add_section('3')
mfig.set('3', 'hi', 'val')
con.set_merge_config(mfig)
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=[],
merge_incomplete_tasks=[],
output_compute=True)
isum = tsf._get_image_stats_summary()
self.assertEqual(isum.get_image_count(), 1)
self.assertEqual(isum.get_total_pixels(), 100)
self.assertEqual(isum.get_total_size_of_images_in_bytes(), expsize)
self.assertEqual(isum.get_image_dimensions_as_dict(),
{(10, 10): 1})
finally:
shutil.rmtree(temp_dir)
def test_get_task_summary(self):
con = CHMConfig('./images', './model', './outdir', '500x500', '20x20')
cfig = configparser.ConfigParser()
cfig.add_section('1')
cfig.set('1', 'hi', 'val')
cfig.add_section('2')
cfig.set('2', 'hi', 'val')
con.set_config(cfig)
mfig = configparser.ConfigParser()
mfig.add_section('3')
mfig.set('3', 'hi', 'val')
con.set_merge_config(mfig)
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=[],
merge_incomplete_tasks=['a'])
ts = tsf.get_task_summary()
self.assertEqual(
ts.get_summary(), 'chmutil version: unknown\n'
'Tiles: 500x500 with 20x20 '
'overlap\nDisable histogram '
'equalization in CHM: True\n'
'Tasks: 1 tiles per task, 1 '
'tasks(s) per node\nTrained '
'CHM model: ./model\nCHM binary: '
'./chm-0.1.0.img\n\nCHM tasks: '
'100% complete (2 of 2 completed)'
'\nMerge tasks: 0% complete (0 of '
'1 completed)\n')
def _check_chm_job(theargs):
"""Runs all jobs for task
"""
sys.stdout.write('\nAnalyzing job. This may take a minute...\n\n')
if theargs.detailed:
sys.stdout.write('In fact this may take extra long cause '
'--detailed was set\n')
sys.stdout.write('WARNING: Runtime information is new and'
' may contain errors\n\n')
chmconfig = _get_chmconfig(theargs.jobdir)
if theargs.skipchm is False:
chm_task_list = _get_incompleted_chm_task_list(chmconfig.get_config())
else:
logger.info("--skipchm set to True. Skipping examination of CHM jobs.")
chm_task_list = []
merge_task_list = _get_incompleted_merge_task_list(
chmconfig.get_merge_config())
tsf = TaskSummaryFactory(chmconfig,
chm_incomplete_tasks=chm_task_list,
merge_incomplete_tasks=merge_task_list,
output_compute=theargs.detailed)
ts = tsf.get_task_summary()
sys.stdout.write(ts.get_summary() + '\n')
if theargs.submit is True:
logger.info(SUBMIT_FLAG + ' set')
return _submit(chmconfig, chm_task_list, merge_task_list)
return 0
def test_get_image_stats_summary_output_compute_true_no_images(self):
temp_dir = tempfile.mkdtemp()
try:
con = CHMConfig(temp_dir, './model', './outdir', '500x500',
'20x20')
cfig = configparser.ConfigParser()
cfig.add_section('1')
cfig.set('1', 'hi', 'val')
cfig.add_section('2')
cfig.set('2', 'hi', 'val')
con.set_config(cfig)
mfig = configparser.ConfigParser()
mfig.add_section('3')
mfig.set('3', 'hi', 'val')
con.set_merge_config(mfig)
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=[],
merge_incomplete_tasks=[],
output_compute=True)
isum = tsf._get_image_stats_summary()
self.assertEqual(isum.get_image_count(), 0)
finally:
shutil.rmtree(temp_dir)
def test_get_files_in_directory_generator_on_empty_dir(self):
temp_dir = tempfile.mkdtemp()
try:
tsf = TaskSummaryFactory(None)
count = 0
for item in tsf._get_files_in_directory_generator(temp_dir):
count += 1
self.assertEqual(count, 0)
finally:
shutil.rmtree(temp_dir)
def test_get_files_in_directory_generator_on_dir_with_file(self):
temp_dir = tempfile.mkdtemp()
try:
tsf = TaskSummaryFactory(None)
count = 0
onefile = os.path.join(temp_dir, 'foo.txt')
open(onefile, 'a').close()
for item in tsf._get_files_in_directory_generator(temp_dir):
self.assertEqual(item, onefile)
count += 1
self.assertEqual(count, 1)
finally:
shutil.rmtree(temp_dir)
def test_get_files_in_directory_generator_on_multiple_files(self):
temp_dir = tempfile.mkdtemp()
try:
tsf = TaskSummaryFactory(None)
one = os.path.join(temp_dir, '1.txt')
two = os.path.join(temp_dir, '2.txt')
three = os.path.join(temp_dir, '3.txt')
open(one, 'a').close()
open(two, 'a').close()
open(three, 'a').close()
thefiles = []
for item in tsf._get_files_in_directory_generator(temp_dir):
thefiles.append(item)
self.assertTrue(one in thefiles)
self.assertTrue(two in thefiles)
self.assertTrue(three in thefiles)
self.assertEqual(len(thefiles), 3)
finally:
shutil.rmtree(temp_dir)
def test_get_image_stats_summary_output_compute_false(self):
con = CHMConfig('./images', './model', './outdir', '500x500', '20x20')
cfig = configparser.ConfigParser()
cfig.add_section('1')
cfig.set('1', 'hi', 'val')
cfig.add_section('2')
cfig.set('2', 'hi', 'val')
con.set_config(cfig)
mfig = configparser.ConfigParser()
mfig.add_section('3')
mfig.set('3', 'hi', 'val')
con.set_merge_config(mfig)
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=[],
merge_incomplete_tasks=[])
isum = tsf._get_image_stats_summary()
self.assertEqual(isum, None)
def test_update_chm_task_stats_with_compute(self):
# pass a None list and taskstats
tsf = TaskSummaryFactory(None, output_compute=True)
res = tsf._update_chm_task_stats_with_compute(None, None)
self.assertEqual(res, None)
# None for res list
ts = TaskStats()
res = tsf._update_chm_task_stats_with_compute(ts, None)
self.assertEqual(res, ts)
# None for taskstats
res = tsf._update_chm_task_stats_with_compute(None, [])
self.assertEqual(res, None)
# empty res list
ts = TaskStats()
res = tsf._update_chm_task_stats_with_compute(ts, [])
self.assertEqual(res, ts)
# try 1 stats
ts = TaskStats()
res = tsf._update_chm_task_stats_with_compute(ts, [(1, 2, 3)])
self.assertEqual(res, ts)
self.assertEqual(res.get_total_tasks_with_cputimes(), 1)
self.assertEqual(res.get_max_memory_in_kb(), 3)
self.assertEqual(res.get_total_cpu_usertime(), 1)
self.assertEqual(res.get_total_cpu_walltime(), 2)
# try 3 entries
ts = TaskStats()
res = tsf._update_chm_task_stats_with_compute(ts,
[(5, 5, 10), (1, 2, 3),
(4, 5, 1)])
self.assertEqual(res, ts)
self.assertEqual(res.get_total_tasks_with_cputimes(), 3)
self.assertEqual(res.get_max_memory_in_kb(), 10)
self.assertEqual(res.get_total_cpu_usertime(), 10)
self.assertEqual(res.get_total_cpu_walltime(), 12)
def test_get_chm_task_stats_outputcompute_true(self):
temp_dir = tempfile.mkdtemp()
try:
con = CHMConfig('./images', './model', temp_dir, '500x500',
'20x20')
run_dir = os.path.join(temp_dir, CHMJobCreator.RUN_DIR)
stdout_dir = os.path.join(run_dir, CHMJobCreator.STDOUT_DIR)
os.makedirs(stdout_dir, mode=0o755)
new_format_file2 = os.path.join(stdout_dir, '778786.2')
f = open(new_format_file2, 'w')
f.write('a\n\b\nc\n')
f.write(' User time (seconds): 100.00\n')
f.write(' System time (seconds): 200.00\n')
f.write(' Percent of CPU this job got: 1591%\n')
f.write(' Elapsed (wall clock) time (h:mm:ss or m:ss): 20:15\n')
f.write('Average shared text size (kbytes): 0\n')
f.write('Average unshared data size (kbytes): 0\n')
f.write('Average stack size (kbytes): 0\n')
f.write(' Maximum resident set size (kbytes): 5287148\n')
f.flush()
f.close()
cfig = configparser.ConfigParser()
cfig.add_section('1')
cfig.set('1', 'hi', 'val')
cfig.add_section('2')
cfig.set('2', 'hi', 'val')
cfig.add_section('3')
cfig.set('3', 'hi', 'val')
cfig.add_section('4')
cfig.set('4', 'hi', 'val')
con.set_config(cfig)
# try with lists with elements
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=['hi'],
merge_incomplete_tasks=['a', 'b'],
output_compute=True)
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 3)
self.assertEqual(ts.get_total_task_count(), 4)
self.assertEqual(ts.get_total_tasks_with_cputimes(), 1)
self.assertEqual(ts.get_max_memory_in_kb(), 5287148)
self.assertEqual(ts.get_total_cpu_usertime(), 100)
self.assertEqual(ts.get_total_cpu_walltime(), 1215)
# try with a second output file
oldformatfile = os.path.join(stdout_dir, '1234.1')
f = open(oldformatfile, 'w')
f.write('HOST: comet-22-63\nDATE: blah\ns\n\n')
f.write('real 150.0\nuser 250.0\nsys 60.0\n')
f.write('chmrunner.py exited with code: 0\n')
f.flush()
f.close()
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=['hi'],
merge_incomplete_tasks=['a', 'b'],
output_compute=True)
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 3)
self.assertEqual(ts.get_total_task_count(), 4)
self.assertEqual(ts.get_total_tasks_with_cputimes(), 2)
self.assertEqual(ts.get_max_memory_in_kb(), 5287148)
self.assertEqual(ts.get_total_cpu_usertime(), 350)
self.assertEqual(ts.get_total_cpu_walltime(), 1365)
finally:
shutil.rmtree(temp_dir)
def test_get_files_in_directory_generator_none_passed_in(self):
tsf = TaskSummaryFactory(None)
count = 0
for item in tsf._get_files_in_directory_generator(None):
count += 1
self.assertEqual(count, 0)
def test_get_chm_task_stats(self):
con = CHMConfig('./images', './model', './outdir', '500x500', '20x20')
cfig = configparser.ConfigParser()
cfig.add_section('1')
cfig.set('1', 'hi', 'val')
cfig.add_section('2')
cfig.set('2', 'hi', 'val')
cfig.add_section('3')
cfig.set('3', 'hi', 'val')
cfig.add_section('4')
cfig.set('4', 'hi', 'val')
# try with none for lists
con.set_config(cfig)
tsf = TaskSummaryFactory(con)
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 0)
self.assertEqual(ts.get_total_task_count(), 4)
# try with empty lists
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=[],
merge_incomplete_tasks=[])
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 4)
self.assertEqual(ts.get_total_task_count(), 4)
# try with lists with elements
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=['hi'],
merge_incomplete_tasks=['a', 'b'])
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 3)
self.assertEqual(ts.get_total_task_count(), 4)
# try with lists with elements 2 incomplete
tsf = TaskSummaryFactory(con,
chm_incomplete_tasks=['hi', 'bye'],
merge_incomplete_tasks=['a', 'b'])
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 2)
self.assertEqual(ts.get_total_task_count(), 4)
def test_get_chm_task_stats_get_config_is_none(self):
con = CHMConfig('./images', './model', './outdir', '500x500', '20x20')
tsf = TaskSummaryFactory(con)
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 0)
self.assertEqual(ts.get_total_task_count(), 0)
def test_get_chm_task_stats_everything_is_none(self):
tsf = TaskSummaryFactory(None)
ts = tsf._get_chm_task_stats()
self.assertEqual(ts.get_completed_task_count(), 0)
self.assertEqual(ts.get_total_task_count(), 0)
def test_chm_compute_hours_consumed_empty_and_with_files(self):
temp_dir = tempfile.mkdtemp()
try:
con = CHMConfig('./images', './model', './outdir', '500x500',
'20x20')
# test empty directory
tsf = TaskSummaryFactory(con)
res = tsf._get_compute_hours_consumed(temp_dir)
self.assertEqual(len(res), 0)
# test one file valid format old way ie real, user, sys
oldformatfile = os.path.join(temp_dir, '1234.1')
f = open(oldformatfile, 'w')
f.write('HOST: comet-22-63\nDATE: blah\ns\n\n')
f.write('real 150.05\nuser 250.10\nsys 66.66\n')
f.write('chmrunner.py exited with code: 0\n')
f.flush()
f.close()
res = tsf._get_compute_hours_consumed(temp_dir)
self.assertEqual(len(res), 1)
self.assertEqual(res, [(250.1, 150.05, 0)])
# test 2 files one with no content
open(os.path.join(temp_dir, '234.22'), 'a').close()
res = tsf._get_compute_hours_consumed(temp_dir)
self.assertEqual(len(res), 1)
self.assertEqual(res, [(250.1, 150.05, 0)])
# test 3 files one with content but not run stats
no_time_file = os.path.join(temp_dir, 'hello.txt')
f = open(no_time_file, 'w')
f.write('h\nasdfasd\n how\n are\n you\n')
f.flush()
f.close()
res = tsf._get_compute_hours_consumed(temp_dir)
self.assertEqual(len(res), 1)
self.assertEqual(res, [(250.1, 150.05, 0)])
# test 5 files 3 have content, one old format, two new format
new_format_file = os.path.join(temp_dir, '778786.1')
f = open(new_format_file, 'w')
f.write('a\n\b\nc\n')
f.write('User time (seconds): 9823.73\n')
f.write('System time (seconds): 9281.73\n')
f.write('Percent of CPU this job got: 1591%\n')
f.write('Elapsed (wall clock) time (h:mm:ss or m:ss): 3:23:15\n')
f.write('Average shared text size (kbytes): 0\n')
f.write('Average unshared data size (kbytes): 0\n')
f.write('Average stack size (kbytes): 0\n')
f.flush()
f.close()
new_format_file2 = os.path.join(temp_dir, '778786.2')
f = open(new_format_file2, 'w')
f.write('a\n\b\nc\n')
f.write(' User time (seconds): 100.00\n')
f.write(' System time (seconds): 200.00\n')
f.write(' Percent of CPU this job got: 1591%\n')
f.write(' Elapsed (wall clock) time (h:mm:ss or m:ss): 20:15\n')
f.write('Average shared text size (kbytes): 0\n')
f.write('Average unshared data size (kbytes): 0\n')
f.write('Average stack size (kbytes): 0\n')
f.write(' Maximum resident set size (kbytes): 5287148\n')
f.flush()
f.close()
res = tsf._get_compute_hours_consumed(temp_dir)
self.assertEqual(len(res), 3)
res.sort()
self.assertEqual(res, [(100.0, 1215.0, 5287148),
(250.1, 150.05, 0), (9823.73, 12195.0, 0)])
finally:
shutil.rmtree(temp_dir)
