def check_classifier(with_external_picture: bool):
bc = BinClassifier()
bc.load(classifier_name="classifier_without_examples")
if not with_external_picture:
(x_train, y_train), (x_test, y_test) = get_dataset()
test(bc, x_test, y_test)
else:
test_all_local(bc, full_res=False)
def classify_outputs(input, outputs):
'''This classifies program evaluation outputs and returns a dictionary
mapping each program to the probability its output is correct.
Arguments:
- input (str): The input string used for each program evaluation
- outputs (list): a list of evaluated outputs for each program
Returns:
- (list) an ordered list of outputs by highest probability that the output was correct.
'''
clist=[]
clist=classifier.test(input,outputs)
o=outputs[clist.index(max(clist))]
d=dict(zip(outputs,clist))
#print(d)
a1 = sorted(d.items(),key = lambda x:x[1],reverse = True)
#print(a1)
sample_key_list = []
for item in a1:
sample_key_list.append(item[0])
#print(sample_key_list)
return sample_key_list
def test():
classfier_name = request.forms.get('classfier_name')
classfier_dump = request.forms.get('classfier')
features_train, labels_train = wtf.getArrays()
clf = pickle.loads(classfier_dump)
preditions, accuracy, recall, precision = classifier.test(clf = clf, features = features_train, labels = labels_train)
return data1+data2
def test():
callback = request.GET.get('callback')
classifier_name = request.GET.get('classifier_name')
classifier_dump = request.GET.get('classifier')
collection_id = request.GET.get('collection_id')
print("Params :")
print(classifier_name)
features_train, labels_train = wtf.getArrays(collection_id)
clf = pickle.loads(classifier_dump)
preditions, accuracy, recall, precision = classifier.test(clf = clf, features = features_train, labels = labels_train)
print("Test :")
print("accuracy" + accuracy)
print("precision" + precision)
print("recall" + recall)
data1 = test_data_to_send(classifier_id, 0, " ", precision, accuracy, recall)
post.send("http://localhost:8080/dataprocessing/rest-api","/result_test_classifier","",data1)
return '{0}({1})'.format(callback, {'a':1, 'b':2})
def test():
callback = request.GET.get('callback')
classifier_name = request.GET.get('classifier_name')
classifier_dump = request.GET.get('classifier')
collection_id = request.GET.get('collection_id')
print("Params :")
print(classifier_name)
features_train, labels_train = wtf.getArrays(collection_id)
clf = pickle.loads(classifier_dump)
preditions, accuracy, recall, precision = classifier.test(
clf=clf, features=features_train, labels=labels_train)
print("Test :")
print("accuracy" + accuracy)
print("precision" + precision)
print("recall" + recall)
data1 = test_data_to_send(classifier_id, 0, " ", precision, accuracy,
recall)
post.send("http://localhost:8080/dataprocessing/rest-api",
"/result_test_classifier", "", data1)
return '{0}({1})'.format(callback, {'a': 1, 'b': 2})
def _test_custom_classifier(classifier):
util.debug("Testing classifier with test data")
stats = {}
for cls in CLASSES:
stats[cls] = { 'total': 0, 'correct': 0, 'incorrect': 0 }
# We'll throw away the class it yields
for img_pixels, cls in util._test_data(CLASSES):
classification, score = classifier.test(img_pixels)
# util.debug("Actual: {}, Classification: {}, Score: {}".format(cls, classification, score))
stats[cls]['total'] += 1
if classification == cls:
stats[cls]['correct'] += 1
else:
stats[cls]['incorrect'] += 1
for cls in stats:
stats[cls]['accuracy'] = stats[cls]['correct'] / stats[cls]['total']
return stats
import torch
import os
import torchvision
from model import TinyModel
from torchvision import transforms
from torch.utils.data import DataLoader
from torchvision.datasets import ImageFolder
from classifier import test
if __name__ == "__main__":
model = TinyModel()
model.load_state_dict(torch.load("checkpoints/epoch_90_0.955.pt"))
test_trans = transforms.Compose([
transforms.ToTensor(),
transforms.Lambda(lambda x: x.repeat(1, 1, 1)),
transforms.Normalize([0.4100, 0.4100, 0.4100],
[0.1165, 0.1165, 0.1165])
])
test_datasets = ImageFolder(os.path.join("ROI_data", "test"),
transform=test_trans)
print(test_datasets.classes)
test_dataloader = DataLoader(test_datasets, batch_size=32, shuffle=False)
criterion = torch.nn.CrossEntropyLoss()
acc = test(model, test_dataloader, criterion)
logger.critical("Uncaught exception",
exc_info=(exc_type, exc_value, exc_traceback))
sys.excepthook = handle_exception
if device == 'cpu':
os.environ['CUDA_VISIBLE_DEVICES'] = ''
logger.debug("Using CPU only")
elif device == 'gpu0':
os.environ['CUDA_VISIBLE_DEVICES'] = '0'
logger.debug("Using GPU 0")
elif device == 'gpu1':
os.environ['CUDA_VISIBLE_DEVICES'] = '1'
logger.debug("Using GPU 1")
elif device == 'gpu':
os.environ['CUDA_VISIBLE_DEVICES'] = '0,1'
logger.debug("Using GPU 0 and 1")
test(logger=logger,
dataset=dataset,
t=time_length,
job_uuid=job_uuid,
epoch=epoch,
val_loss=val_loss,
visualize_score=True,
visualize_frame=False)
logger.info("Job {} ({}) has finished testing.".format(job_uuid, dataset))
def main(params, input_dir="data", output_dir="out", cuda_enable=False):
for data_file in ["zoomeddata_32_64_64.hdf5"]:
d_train, d_dev, d_test = load_data(os.path.join(input_dir, data_file), img_size=params["img_size"])
# build the vocabulary for images
vocab = {
"subfamily": [],
"tribe": [],
"genus": []
}
for d in d_train:
vocab["subfamily"].append(d[1][0])
vocab["tribe"].append(d[1][1])
vocab["genus"].append(d[1][2])
for k in vocab:
vocab[k] = list(set(vocab[k]))
mean_image = np.mean([d[0] for d in d_train])
std_image = np.std([d[0] for d in d_train])
def normalize_fn(X):
return ((X - mean_image) / 255.)
def process_data(data, tree_label=False):
rand_indices = np.random.permutation(len(data))
if not tree_label:
data_out = [(normalize_fn(data[i][0]), vocab["genus"].index(data[i][1][2]))
for i in rand_indices]
else:
data_out = [(normalize_fn(data[i][0]),
np.array([vocab["subfamily"].index(data[i][1][0]),
vocab["tribe"].index(data[i][1][1]),
vocab["genus"].index(data[i][1][2])]))
for i in rand_indices]
return data_out
if params["add_synthetic_data"]:
synthesized = gen_synthetic(d_train)
print("{} synthetic examples added.".format(len(synthesized)))
else:
synthesized = []
tree_label = params["tree_prediction"]
train_data = batch_data(process_data(d_train + synthesized, tree_label), batch_size=params["batch_size"])
dev_data = batch_data(process_data(d_dev, tree_label), batch_size=params["batch_size"])
test_data = batch_data(process_data(d_test, tree_label), batch_size=params["batch_size"])
#net = LinearModel(params, len(vocab["genus"]))
#net = SimpleNet(params, len(vocab["genus"]))
for model_class in [LinearModel, SimpleNet, SimpleConvNet, ConvNet]:
print(">>>>>>>>>> {} <<<<<<<<<<".format(model_class))
if tree_label:
num_classes = len(vocab["subfamily"]) + len(vocab["tribe"]) + len(vocab["genus"])
else:
num_classes = len(vocab["genus"])
net = model_class(params, num_classes)
train_acc, dev_acc = classifier.train(net, train_data, dev_data, vocab, params, cuda_enable)
for test_index in [0, 1, 2]:
test_acc = classifier.test(net, test_data, vocab, cuda_enable, tree_label, test_index)
print("[Test accuracy for label {} is {}]".format(test_index, test_acc))
## show images
#if examples_to_demo > 0:
# show_data = [d_dev[i] for i in np.random.randint(len(dev_data), size=examples_to_demo)]
# show_data = batch_data(process_data(show_data), batch_size=1)
# classifier.test(net, show_data, cuda_enable, show_example=True)
with open(os.path.join(output_dir, "result_{}.log".format(model_class.__name__)), "w") as f:
f.write("train_acc, dev_acc\n")
for i in range(len(train_acc)):
f.write("{:.3f}".format(train_acc[i]) + ", " + "{:.3f}".format(dev_acc[i]) + "\n")
config["max_image_size"],
config["canvas"],
test_set["random"], model)
data_test = test_set["genuines"] + test_set["skilled"] + test_set[
"random"]
test_classes = []
for i in test_set["genuines"]:
test_classes.append(1)
for i in test_set["skilled"]:
test_classes.append(0)
for i in test_set["random"]:
test_classes.append(0)
test_sets.append(data_test)
partial_results = classifier.test(clf_mlp, test_sets, test_classes,
test_config["genuine"],
test_config["skilled"],
test_config["random"])
results["mlp"][0] += (partial_results[0])
results["mlp"][1] += (partial_results[1])
results["mlp"][2] += (partial_results[2])
results["mlp"][3] += (partial_results[3])
results["mlp"][4] += (partial_results[4])
results["mlp"][5] += (partial_results[5])
results["mlp"][6] += (partial_results[6])
partial_results = classifier.test(clf_svm_linear, test_sets, test_classes,
test_config["genuine"],
test_config["skilled"],
test_config["random"])
results["svm_linear"][0] += (partial_results[0])
results["svm_linear"][1] += (partial_results[1])
results["svm_linear"][2] += (partial_results[2])
Meant to be deployed with Apache Spark
"""
import csv, classifier, db, spark, time, write
import numpy as np
TRAIN_FILENAME = './data/smtrain.csv'
TEST_FILENAME = './data/smtest.csv'
SKLEARN_PATH = './data/models/sklearn'
SPARK_PATH = './data/models/spark'
if __name__ == '__main__':
# read the training data
xtrain, ytrain = classifier.readdata(TRAIN_FILENAME)
xtest, ytest = classifier.readdata(TEST_FILENAME)
countvect, transformer, model = classifier.train(xtrain, ytrain)
acc, model = classifier.test(model, xtest, ytest, countvect, transformer)
print('Sklearn acc: {}'.format(acc))
print('Saving sklearn')
classifier.save(SKLEARN_PATH, model, countvect, transformer)
countvect, transformer, model = classifier.load(SKLEARN_PATH)
print(classifier.predict(model, ['i like something'], countvect, transformer))
# start looping over tweets
# for tweet in db.gettweets():
# text = [tweet['text']]
# prediction = clf.predict(classifier.transform(text))
# print(text, ' ^^ ', prediction)
# time.sleep(0.5)
arr = [(86, 0.001149, '6ab962e0-b3bb-47d1-a513-4d68bdd2e08c', 0)]
arr = [(64, 0.000858, 'ae14934b-6961-45b1-b712-00381beef7dc', 0)]
arr = [(11, 0.003981, 'c0d6c0db-1a41-4089-9f05-ce9aaf7f9ccd', 0)]
arr = [(100, 0.003988, '968b2b8d-ba69-49fb-a27a-6d20787c4629', 0)]
arr = [(100, 0.003504, 'd1e9c23c-e754-4027-be93-111069ea3b81', 0)]
arr = [(298, 0.003159, 'f5846318-6990-4622-b584-ececf33a54d7', 0)]
# UCSD Ped2
# arr = [(749, 0.000554, '537f1112-8ec0-44eb-a380-c3a6e5a3c698', 0)]
# CUHK
# arr = [(227, 0.000455, 'c51f37de-9c2c-4941-b881-5029044a4564', 0)]
for item in arr:
print("TESTING UUID", item[2])
print("###Testing epoch", item[0])
test(logger=logger,
dataset=dataset,
t=item[3],
job_uuid=item[2],
epoch=item[0],
val_loss=item[1],
visualize_score=True,
visualize_frame=True)
# n_videos = {'avenue': 21, 'enter': 6, 'exit': 4, 'UCSD_ped1': 36, 'UCSD_ped2': 12}
# save_path = os.path.join(job_folder, 'result')
# auc_overall, eer_overall = calc_auc_overall(logger, dataset, n_videos[dataset], save_path)
# auc_overall, eer_overall = calc_auc_pixel(logger, dataset, n_videos[dataset], save_path)
logger.info("Job {} ({}) has finished testing.".format(job_uuid, dataset))