def _setup_flavor(env, flavor):
"""Setup a flavor, providing customization hooks to modify CloudBioLinux installs.
Specify flavor as a name, in which case we look it up in the standard flavor
directory (contrib/flavor/your_flavor), or as a path to a flavor directory outside
of cloudbiolinux.
"""
env.flavor = Flavor(env)
env.flavor_dir = None
if flavor:
# setup the directory for flavor customizations
if os.path.isabs(flavor):
flavor_dir = flavor
else:
flavor_dir = os.path.join(os.path.dirname(__file__), "..",
"contrib", "flavor", flavor)
assert os.path.exists(flavor_dir), \
"Did not find directory {0} for flavor {1}".format(flavor_dir, flavor)
env.flavor_dir = flavor_dir
# Load python customizations to base configuration if present
py_flavor = "{0}flavor".format(
os.path.split(os.path.realpath(flavor_dir)))
flavor_custom_py = os.path.join(flavor_dir, "{0}.py".format(py_flavor))
if os.path.exists(flavor_custom_py):
sys.path.append(flavor_dir)
mod = __import__(flavor_dir, fromlist=[py_flavor])
env.logger.info("This is a %s" % env.flavor.name)
def _setup_flavor(env, flavor):
"""Setup a flavor, providing customization hooks to modify CloudBioLinux installs.
Specify flavor as a name, in which case we look it up in the standard
flavor directory (contrib/flavor/your_flavor), or as an absolute path to a
flavor directory outside of cloudbiolinux.
"""
env.flavor = Flavor(env)
env.flavor_dir = None
if flavor:
# set the directory for flavor customizations
if os.path.isabs(flavor) or os.path.exists(flavor):
flavor_dir = flavor
else:
flavor_dir = os.path.join(os.path.dirname(__file__), '..', 'contrib', 'flavor', flavor)
assert os.path.exists(flavor_dir), \
"Did not find directory {0} for flavor {1}".format(flavor_dir, flavor)
env.flavor_dir = flavor_dir
flavor_name = os.path.split(flavor_dir)[-1]
# Reinstantiate class if custom defined
import cloudbio.flavor
try:
env.flavor = getattr(cloudbio.flavor, flavor_name.capitalize())(env)
except AttributeError:
pass
env.flavor.name = flavor_name
# Load python customizations to base configuration if present
for ext in ["", "flavor"]:
py_flavor = os.path.split(os.path.realpath(flavor_dir))[1] + ext
flavor_custom_py = os.path.join(flavor_dir, "{0}.py".format(py_flavor))
if os.path.exists(flavor_custom_py):
sys.path.append(flavor_dir)
mod = __import__(py_flavor, fromlist=[py_flavor])
env.logger.info(env.flavor)
env.logger.info("This is a %s flavor" % env.flavor.name)
def __init__(self, env):
Flavor.__init__(self,env)
self.name = "Boinc Flavor"
def __init__(self, env):
Flavor.__init__(self, env)
self.name = "Millstone Flavor"
def __init__(self, env):
print "-> In GVLFlavor"
Flavor.__init__(self, env)
self.name = "GVL Flavor"
def __init__(self, env): Flavor.__init__(self,env) self.name = "Seal Flavor"
def __init__(self, env):
print "-> In GVLFlavor"
Flavor.__init__(self, env)
self.name = "GVL Flavor"
def __init__(self, env):
Flavor.__init__(self, env)
self.name = "Bio* cross-lang flavor"
def __init__(self, env):
Flavor.__init__(self, env)
self.name = "Millstone Flavor"
def __init__(self, env):
Flavor.__init__(self, env)
self.name = "Boinc Flavor"
def __init__(self, env):
Flavor.__init__(self,env)
self.name = "Bio* cross-lang flavor"
def __init__(self, env):
Flavor.__init__(self,env)
self.name = "Phylogeny Flavor"
def __init__(self, env):
Flavor.__init__(self, env)
self.name = "NeCTAR Flavor"
def __init__(self, env):
Flavor.__init__(self, env)
self.name = "Seal Flavor"