def test_export_nexus(self):
"""The 'export nexus-basic' and 'nexus-ogt' commands."""
cnr = cnvlib.read("formats/amplicon.cnr")
table_nb = export.export_nexus_basic(cnr)
self.assertEqual(len(table_nb), len(cnr))
varr = commands.load_het_snps("formats/na12878_na12882_mix.vcf", None,
None, 15, None)
table_ogt = export.export_nexus_ogt(cnr, varr, 0.05)
self.assertEqual(len(table_ogt), len(cnr))
def test_export_nexus(self):
"""The 'export nexus-basic' and 'nexus-ogt' commands."""
cnr = cnvlib.read("formats/amplicon.cnr")
table_nb = export.export_nexus_basic(cnr)
self.assertEqual(len(table_nb), len(cnr))
varr = commands.load_het_snps("formats/na12878_na12882_mix.vcf",
None, None, 15, None)
table_ogt = export.export_nexus_ogt(cnr, varr, 0.05)
self.assertEqual(len(table_ogt), len(cnr))