def test_pfba_benchmark(self, large_model, benchmark, solver):
convert_to_irreversible(large_model)
def do_pfba(solver):
pfba(large_model, solver=solver, already_irreversible=True)
benchmark(do_pfba, solver)
def setUp(self):
self.model = Model("test model")
A = Metabolite("A")
r = Reaction("r")
r.add_metabolites({A: -1})
r.lower_bound = -1000
r.upper_bound = 1000
self.model.add_reaction(r)
convert_to_irreversible(self.model)
self.model.remove_reactions(["r"])
def test_remove_breaks(self):
model = Model("test model")
A = Metabolite("A")
r = Reaction("r")
r.add_metabolites({A: -1})
r.lower_bound = -1000
r.upper_bound = 1000
model.add_reaction(r)
convert_to_irreversible(model)
model.remove_reactions(["r"])
with pytest.raises(KeyError):
revert_to_reversible(model)
def test_remove_breaks(self):
model = Model("test model")
A = Metabolite("A")
r = Reaction("r")
r.add_metabolites({A: -1})
r.lower_bound = -1000
r.upper_bound = 1000
model.add_reaction(r)
convert_to_irreversible(model)
model.remove_reactions(["r"])
with pytest.raises(KeyError):
revert_to_reversible(model)