def test_build_alphabet_map_w_alphabet_id(self):
"""build_alphabet_map: returns correct dict when given alphabet_id
"""
expected = dict(
[
("G", "G"),
("A", "G"),
("V", "G"),
("L", "G"),
("I", "G"),
("S", "G"),
("P", "G"),
("T", "G"),
("C", "G"),
("N", "G"),
("D", "G"),
("X", "G"),
("B", "G"),
("M", "M"),
("F", "M"),
("Y", "M"),
("W", "M"),
("Q", "M"),
("K", "M"),
("H", "M"),
("R", "M"),
("E", "M"),
("Z", "M"),
]
)
self.assertEqual(build_alphabet_map("size_2"), expected)
self.assertEqual(build_alphabet_map("charge_3")["E"], "D")
self.assertEqual(build_alphabet_map("charge_3")["B"], "A")
self.assertEqual(build_alphabet_map("charge_3")["K"], "K")
def test_build_alphabet_map_handles_all_ids_and_defs_wo_error(self):
"""build_alphabet_map: handles all pre-defined alphabets w/o error"""
for alphabet_id, alphabet_def in alphabets.items():
try:
build_alphabet_map(alphabet_id=alphabet_id)
except ValueError:
raise AssertionError, "Failed on id: %s" % alphabet_id
try:
build_alphabet_map(alphabet_def=alphabet_def)
except ValueError:
raise AssertionError, "Failed on def: %s" % str(alphabet_def)
def test_build_alphabet_map_handles_all_ids_and_defs_wo_error(self):
"""build_alphabet_map: handles all pre-defined alphabets w/o error"""
for alphabet_id, alphabet_def in list(alphabets.items()):
try:
build_alphabet_map(alphabet_id=alphabet_id)
except ValueError:
raise AssertionError("Failed on id: %s" % alphabet_id)
try:
build_alphabet_map(alphabet_def=alphabet_def)
except ValueError:
raise AssertionError("Failed on def: %s" % str(alphabet_def))
def test_build_alphabet_map_w_alphabet_id(self):
"""build_alphabet_map: returns correct dict when given alphabet_id
"""
expected = dict([\
('G','G'), ('A','G'), ('V','G'), ('L','G'), ('I','G'),\
('S','G'), ('P','G'), ('T','G'), ('C','G'), ('N','G'), ('D','G'),\
('X','G'), ('B','G'), ('M','M'), ('F','M'), ('Y','M'), ('W','M'),\
('Q','M'), ('K','M'), ('H','M'), ('R','M'), ('E','M'), ('Z','M')])
self.assertEqual(build_alphabet_map('size_2'),expected)
self.assertEqual(build_alphabet_map('charge_3')['E'],'D')
self.assertEqual(build_alphabet_map('charge_3')['B'],'A')
self.assertEqual(build_alphabet_map('charge_3')['K'],'K')
def test_build_alphabet_map_w_alphabet_id(self):
"""build_alphabet_map: returns correct dict when given alphabet_id
"""
expected = dict([\
('G','G'), ('A','G'), ('V','G'), ('L','G'), ('I','G'),\
('S','G'), ('P','G'), ('T','G'), ('C','G'), ('N','G'), ('D','G'),\
('X','G'), ('B','G'), ('M','M'), ('F','M'), ('Y','M'), ('W','M'),\
('Q','M'), ('K','M'), ('H','M'), ('R','M'), ('E','M'), ('Z','M')])
self.assertEqual(build_alphabet_map('size_2'), expected)
self.assertEqual(build_alphabet_map('charge_3')['E'], 'D')
self.assertEqual(build_alphabet_map('charge_3')['B'], 'A')
self.assertEqual(build_alphabet_map('charge_3')['K'], 'K')
def test_build_alphabet_map_w_alphabet_def(self):
"""build_alphabet_map: returns correct dict when given alphabet_def
"""
expected = dict(
[
("G", "S"),
("A", "S"),
("V", "S"),
("L", "S"),
("I", "S"),
("S", "S"),
("P", "S"),
("T", "S"),
("C", "S"),
("N", "S"),
("D", "S"),
("X", "S"),
("B", "S"),
("M", "L"),
("F", "L"),
("Y", "L"),
("W", "L"),
("Q", "L"),
("K", "L"),
("H", "L"),
("R", "L"),
("E", "L"),
("Z", "L"),
]
)
self.assertEqual(build_alphabet_map(alphabet_def=[("S", "GAVLISPTCNDXB"), ("L", "MFYWQKHREZ")]), expected)
def test_build_alphabet_map_w_alphabet_def(self):
"""build_alphabet_map: returns correct dict when given alphabet_def
"""
expected = dict([\
('G','S'), ('A','S'), ('V','S'), ('L','S'), ('I','S'),\
('S','S'), ('P','S'), ('T','S'), ('C','S'), ('N','S'), ('D','S'),\
('X','S'), ('B','S'), ('M','L'), ('F','L'), ('Y','L'), ('W','L'),\
('Q','L'), ('K','L'), ('H','L'), ('R','L'), ('E','L'), ('Z','L')])
self.assertEqual(build_alphabet_map(alphabet_def=\
[('S','GAVLISPTCNDXB'),('L','MFYWQKHREZ')]),expected)
def test_build_alphabet_map_w_alphabet_def(self):
"""build_alphabet_map: returns correct dict when given alphabet_def
"""
expected = dict([\
('G','S'), ('A','S'), ('V','S'), ('L','S'), ('I','S'),\
('S','S'), ('P','S'), ('T','S'), ('C','S'), ('N','S'), ('D','S'),\
('X','S'), ('B','S'), ('M','L'), ('F','L'), ('Y','L'), ('W','L'),\
('Q','L'), ('K','L'), ('H','L'), ('R','L'), ('E','L'), ('Z','L')])
self.assertEqual(build_alphabet_map(alphabet_def=\
[('S','GAVLISPTCNDXB'),('L','MFYWQKHREZ')]),expected)
