Esempi in Python per LoadTree.rootedWithTip

Esempio n. 1

#!/usr/bin/env python

from cogent import LoadTree
tr = LoadTree('test.nw')
print tr.rootedWithTip("X")

Esempio n. 2

File: test_tree2.py Progetto: carze/clovr-base

 def test_reroot(self):
     tree = LoadTree(treestring="((a,b),(c,d),e)")
     tree2 = tree.rootedWithTip('b')
     self.assertEqual(tree2.getNewick(), "(a,b,((c,d),e));")

Esempio n. 3

File: test_tree2.py Progetto: carze/clovr-base

 def test_reroot(self):
     tree = LoadTree(treestring="((a,b),(c,d),e)")
     tree2 = tree.rootedWithTip('b')
     self.assertEqual(tree2.getNewick(), "(a,b,((c,d),e));")