def test_without_log_config_path(self, mock_read_config, mock_open):
mock_read_config.return_value = {**self.config, "log_config": None}
mock_open.side_effect = [
mock.mock_open(read_data=yaml.dump(self.log_config)).return_value
]
init_logging()
mock_read_config.assert_called_once()
mock_open.assert_not_called()
def test_with_config(self, mock_read_config, mock_open):
mock_read_config.return_value = self.config
mock_open.side_effect = [
mock.mock_open(read_data=yaml.dump(self.log_config)).return_value
]
init_logging(self.config)
mock_read_config.assert_not_called()
mock_open.assert_called_once_with("env/test/logging.yaml",
"r",
encoding="utf8")
import click
from collector.config import read_config, init_logging
from collector.tasks.merge_intensive_care_dataset.task import MergeIntensiveCareDataset
from collector.store import LocalStore
@click.command()
@click.option("--name", help="The name of the dataset")
@click.option("--input_folder", help="The folder containing the dataset files")
@click.option("--output_folder",
help="The folder where the dataset should be stored")
def main(name, input_folder, output_folder):
config = read_config()
store = LocalStore(config["store"]["path"])
task = MergeIntensiveCareDataset(config["collector"], store)
task(name=name, input_folder=input_folder, output_folder=output_folder)
if __name__ == "__main__":
# pylint: disable=no-value-for-parameter
init_logging()
main()
