Esempio n. 1
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 def getCombinations(self, combinations, argDict):
     editAreas = []
     newCombinations = []
     for comboList, areaLabel in combinations:
         newComboList = []
         for editArea in comboList:
             #print("Get edit area TF: get edit area combo", editArea)
             #print("TF2: Get Edit Area set up edit areas", editArea)
             newArea = self.getEditArea(editArea, argDict)
             if comboList.index(editArea) == 0:
                 comboNumber = self.getComboNumber()
                 label = "Combo" + repr(comboNumber)
                 refId = ReferenceID(label)
                 #global GridLoc
                 #GridLoc = newArea.getGloc()
                 area = ReferenceData(newArea)
                 area.setId(refId)
                 #GridLoc, refId, newArea.getPolygons("LATLON"), "LATLON")
                 # randerso: I don't think this is necessary
                 # area.convertToAWIPS()
             newComboList.append(newArea.getId().getName())
             area = self.unionAreas(label, area, newArea)
         if argDict["fcstType"] == "table":
             # Allow user-supplied area labels to be used for simple tables
             editAreas.append((area, areaLabel))
         else:
             editAreas.append((area, label))
         newCombinations.append((newComboList, label))
     return editAreas, newCombinations
Esempio n. 2
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 def intersectAreas(self, name, area1, area2):
     # AND the areas (ReferenceData objects)
     # together and return a ReferenceData object
     cpy = ReferenceData(area1)
     refData = cpy.andEquals(area2)
     #refData.convertToLatLon()
     refData.setId(ReferenceID(name))
     refData.getGrid()
     return refData
Esempio n. 3
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 def intersectAreas(self, name, area1, area2):
     # AND the areas (ReferenceData objects)
     # together and return a ReferenceData object
     cpy = ReferenceData(area1)
     refData = cpy.andEquals(area2)
     #refData.convertToLatLon()
     refData.setId(ReferenceID(name))
     refData.getGrid()
     return refData
Esempio n. 4
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def saveEditAreaGrid(maskName, iscMask, siteID):
    iscMask.getPolygons(CoordinateType.LATLON)

    pathMgr = PathManagerFactory.getPathManager()
    commonStaticConfig = pathMgr.getContext(LocalizationType.COMMON_STATIC,
                                            LocalizationLevel.CONFIGURED)
    commonStaticConfig.setContextName(siteID)
    sitePath = pathMgr.getFile(commonStaticConfig, "gfe/editAreas").getPath()
    editAreaPath = str(sitePath) + "/" + maskName + ".xml"
    ReferenceData.getJAXBManager().marshalToXmlFile(iscMask, editAreaPath)
Esempio n. 5
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def makeArea(gridLoc, pointList, refname=None):
    " Make a Reference Area with a unique ReferenceID"
    from com.vividsolutions.jts.geom import GeometryFactory, LinearRing, Coordinate, Polygon
    from com.raytheon.uf.common.dataplugin.gfe.reference import ReferenceData
    CoordinateType = ReferenceData.CoordinateType
    geomFactory = GeometryFactory()
    import jep
    size = len(pointList)
    if pointList[0] != pointList[size - 1]:  # closing the loop
        pointList.append(pointList[0])
    pointArray = jep.jarray(len(pointList), Coordinate)
    for i in range(len(pointList)):
        pointArray[i] = pointList[i]
    lr = geomFactory.createLinearRing(pointArray)
    poly = geomFactory.createPolygon(lr, jep.jarray(0, LinearRing))
    polyArray = jep.jarray(1, Polygon)
    polyArray[0] = poly
    region = geomFactory.createMultiPolygon(polyArray)
    if refname is None:
        refname = "Ref" + getTime()
    refId = ReferenceID(refname)
    refData = ReferenceData(gridLoc, refId, region, CoordinateType.LATLON)
    # randerso: I don't think this is necessary
    # refData.convertToAWIPS()
    return refData
Esempio n. 6
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def getEditArea(name, siteID):

    pathMgr = PathManagerFactory.getPathManager()

    commonStaticConfig = pathMgr.getContext(LocalizationType.COMMON_STATIC,
                                            LocalizationLevel.SITE)
    commonStaticConfig.setContextName(siteID)
    file = pathMgr.getFile(commonStaticConfig,
                           "gfe/editAreas" + File.separator + name + ".xml")

    if not os.path.exists(file.getPath()):
        commonStaticConfig = pathMgr.getContext(LocalizationType.COMMON_STATIC,
                                                LocalizationLevel.CONFIGURED)
        commonStaticConfig.setContextName(siteID)
        file = pathMgr.getFile(
            commonStaticConfig,
            "gfe/editAreas" + File.separator + name + ".xml")

    refData = None

    try:
        if os.path.exists(file.getPath()):
            refData = ReferenceData.getJAXBManager().unmarshalFromXmlFile(
                file.getPath())
        else:
            LogStream.logProblem("EDIT AREA NOT FOUND: ", name, " for site ",
                                 siteID)
    except:
        LogStream.logProblem("Unable to unmarshal " + name + " in iscExtract")

    return refData
Esempio n. 7
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    def evaluate(self, expression, timeInfluence=None):
        # if no expression, return the empty ref set
        if len(expression) == 0:
            return self.__dm.getRefManager().emptyRefSet()

        if timeInfluence is None:
            timeInfluence = self.__dm.getSpatialDisplayManager().getSpatialEditorTime()
        
        if not isinstance(timeInfluence, AbsTime.AbsTime):
            timeInfluence = AbsTime.AbsTime(timeInfluence)
        
        self._query.setTime(timeInfluence.unixTime())
        grid = self._query.eval(expression)
        if type(grid) != type(numpy.array([])) or grid.shape != self._shape:
            raise TypeError("query did not eval to a grid of shape: "
                            + `self._shape`)

        from com.raytheon.uf.common.dataplugin.gfe.reference import ReferenceData, ReferenceID
        from com.raytheon.uf.common.dataplugin.gfe.grid import Grid2DBit        

        if grid.dtype == 'bool':
            grid = numpy.array(grid, 'byte') 
        bits = Grid2DBit.createBitGrid(grid.shape[1], grid.shape[0], grid)  
        return ReferenceData(self.gloc(),
                             ReferenceID(expression), 
                             expression, bits)
Esempio n. 8
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    def __saveEA(self, name, grid):
        #save edit area from a grid
        gloc = self.__dataMgr.getParmManager().compositeGridLocation()
        id = ReferenceID(name)
        # convert grid to polygons
        grid2d = Grid2DBit.createBitGrid(int(gloc.getNx()), int(gloc.getNy()),
                                         grid)
        refdata = ReferenceData(gloc, id, grid2d)

        # save the edit area
        self.__dataMgr.getRefManager().saveRefSet(refdata)
Esempio n. 9
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 def getUnion(self, argDict, areaLabels, areaPrefix):
     GridLoc = self.getIFPClient().getDBGridLocation()
     area = None
     for areaLabel in areaLabels:
         newArea = self.getEditArea(areaLabel, argDict)
         if areaLabels.index(areaLabel) == 0:
             comboNumber = self.getComboNumber()
             label = areaPrefix + ` int(time.time()) ` + ` comboNumber `
             refId = ReferenceID(label)
             from com.raytheon.uf.common.dataplugin.gfe.reference import ReferenceData
             CoordinateType = ReferenceData.CoordinateType
             coordType = CoordinateType.valueOf('LATLON')
             area = ReferenceData(GridLoc, refId,
                                  newArea.getPolygons(coordType), coordType)
             # randerso: I don't think this is necessary
             # area.convertToAWIPS()
         area = self.unionAreas(label, area, newArea)
     return area
Esempio n. 10
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 def __createArea(self, latLonTuple, argDict):
     # Return a ReferenceData created for the given lat,lon and dimension
     # If dim is zero, make edit area of the one grid
     #  point closest to the lat/lon value.
     lat, lon, dim = latLonTuple
     name = self.__getLatLonAreaName((lat, lon, dim))
     #print("\ncreateArea", lat, lon, dim, name)
     if dim != 0:
         for x in range(100):
             points = makeSquare(lat, lon, dim)
             pointList = []
             for point in points:
                 pointList.append(makePoint(point))
             refData = makeArea(self.ifpClient.getDBGridLocation(),
                                pointList,
                                refname=name)
             # Make sure we have at least one grid point in
             # the edit area
             if refData.getGrid().isAnyBitsSet():
                 #print("returning", dim)
                 return refData
             # Increment dim and try again
             #print("iterating", dim)
             dim += 0.25
         msg = "\nWARNING!!! EMPTY EDIT AREA. INCREASE LAT/LON AREA DIMENSION!!\n"
         self.log.warning(msg)
         return None
     else:
         from com.raytheon.uf.common.dataplugin.gfe.grid import Grid2DBit
         # Get grid cell coordinates for lat/lon
         gridLoc = self.ifpClient.getDBGridLocation()
         nx = int(gridLoc.getNx())
         ny = int(gridLoc.getNy())
         cc2D = gridLoc.gridCell(float(lat), float(lon))
         # convert grid cell to Grid2DBit with single bit set
         grid2Dbit = Grid2DBit(nx, ny)
         if (nx > cc2D.x >= 0 and ny > cc2D.y >= 0):
             grid2Dbit.set(int(cc2D.x), int(cc2D.y))
         #refData = GridLoc.convertToReferenceData(grid2Dbit)
         refID = ReferenceID(name)
         refData = ReferenceData(gridLoc, refID, grid2Dbit)
         return refData
Esempio n. 11
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 def createLatLonArea(self, lat, lon, dim):
     # Create a square edit area given a latitude, longitude,
     #  and kilometer dimension for the sides.
     # Example:
     #   area = self.createLatLonArea(40.93, -106.26, 5)
     #
     # If dim is zero, make edit area of the one grid
     #  point closest to the lat/lon value.
     #
     name = self.getLatLonAreaName((lat, lon, dim))
     if dim != 0:
         for x in range(100):
             points = self.makeSquare(lat, lon, dim)
             pointList = []
             for point in points:
                 pointList.append(self.makePoint(point))
             refData = self.makeArea(pointList, refname=name)
             # Make sure we have at least one grid point in
             # the edit area
             if refData.getGrid().isAnyBitsSet():
                 return refData
             # Increment dim and try again
             dim += 0.25
         msg = "\nWARNING!!! EMPTY EDIT AREA. INCREASE LAT/LON AREA DIMENSION!!\n"
         self.log.warning(msg)
         return None
     else:
         # Get grid cell coordinates for lat/lon
         gridLoc = self.getGridLoc()
         cc2D = gridLoc.gridCell(lat, lon)
         # convert grid cell to Grid2DBit with single bit set
         grid2Dbit = JavaGrid2DBit(gridLoc.gridSize().x,
                                   gridLoc.gridSize().y)
         grid2Dbit.set(int(cc2D.x), int(cc2D.y))
         #refData = gridLoc.convertToReferenceData(grid2Dbit)
         refID = ReferenceID(name)
         refData = ReferenceData(gridLoc, refID, grid2Dbit)
         #refData.setId(refID)
         return refData
Esempio n. 12
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def executeIscExtract(parmNames, databaseName, startTime, endTime,
                      irtTableAddressA, irtTableAddressB, transmitScript, ourServerHost,
                      ourServerPort, ourServerProtocol, ourMHSid, ourSiteID, destinations=None):
    
    startT = time.time()
    parms = parmNames
    dbid = databaseName
    startTR = startTime
    endTR = endTime
    xmlDestinations = destinations
    ancf = irtTableAddressA
    bncf = irtTableAddressB
    xmtScript = transmitScript
    serverHost = ourServerHost
    serverPort = ourServerPort
    serverProtocol = ourServerProtocol
    mhsid = ourMHSid
    siteID = ourSiteID
    
    myOfficeType = IFPServerConfigManager.getServerConfig(siteID).officeType()
    
    
    #--------------------------------------------------------------------
    # determine the list of destination servers
    #--------------------------------------------------------------------
    try:
        nowT = time.time()   #current time
        useUntilTime = None  #cached use until time
        cacheFilename = "/tmp/" + serverHost + serverPort + ".iscExtract"
        cachedXmlDestinations = None
        #if xmlDestinations is None:    #destinations not on command line
        #    # check the cache 
        #    try:
        #        fd = open(cacheFilename, 'rb')
        #        buf = fd.read()
        #        fd.close()
        #        useUntilTime, cachedXmlDestinations = cPickle.loads(buf)
        #        nowT = time.time()   #current time
        #        if nowT > useUntilTime:
        #            xmlDestinations = None   #cache is too old
        #            useUntilTime = None
        #        else:
        #            logEvent('Using xmlDestinations cache')
        #            xmlDestinations = cachedXmlDestinations
        #    except:
        #        pass
            
            
        # need to contact IRT to get destinations
        irt = IrtAccess.IrtAccess(ancf, bncf)
        if xmlDestinations is None:
            logEvent('contacting IRT to get destinations')
            count = 1
            while True:
                status, xmlDestinations = irt.getSendAddrs(siteID)
                logEvent('IRT getSendAddrs status:', status)
                if status:
                    # if we obtained XML destinations from IRT, then decode
                    # the useUntilTime field
                    try:
                        d = ElementTree.ElementTree(ElementTree.XML(xmlDestinations))
                        dE = d.getroot()
                        for e in dE:
                            if e.tag == "useuntil":
                                isoTimeStr = e.text
                                idx = isoTimeStr.find(".") 
                                if idx != - 1:
                                    isoTimeStr = isoTimeStr[0:idx]  #eliminate subseconds
                                useUntilTime = time.mktime(time.strptime(isoTimeStr,
                                  "%Y-%m-%dT%H:%M:%S"))
                                logEvent("Use Until: ", isoTimeStr)
                    except:
                        logProblem("Malformed XML on getSendAddrs()")
                        logProblem("XML=", xmlDestinations)
                        return
                    if useUntilTime is None:
                        useUntilTime = time.time() + 180.0   #3 minutes default
                        logEvent("Using default 180 second useUntilTime")
    
                    # write the cache
                    fd = open(cacheFilename, 'wb')
                    buf = cPickle.dumps((useUntilTime, xmlDestinations))
                    fd.write(buf)
                    fd.close()
                    break   #success from the irt
                else:
                    # try again and again for 10 minutes, then use cache
                    # if available and alert GFE users
                    if time.time() - nowT > 600.00: 
                        logProblem("Unable to access IRT for send addrs")
                        if cachedXmlDestinations is None:
                            s = "Unable to access IRT for send addrs. Previous" + \
                              " cache not available."
                            logProblem(s)
                            return
                        # use cached value, even if out of date
                        else:
                            xmlDestinations = cachedXmlDestinations
                            if useUntilTime is not None:
                                s = time.asctime(time.gmtime(useUntilTime))
                            else:
                                s = "Unknown"
                            logProblem("Using expired cache. Date=", s)
    
                            #determine when we issued our last GFE alert
                            #we alert every 30 minutes.
                            try:
                                fd = open(cacheFilename + "-warn", 'rb')
                                buf = fd.read()
                                fd.close()
                                lastAlertTime = cPickle.loads(buf)
                            except:
                                lastAlertTime = 0  #for way long ago
                            if time.time() - lastAlertTime > 1800.0:
                                logProblem("Sending GFE notification")
                                msg = """
    Contact NCF. ifpServer is unable to contact IRT central server.  ISC
    traffic routing information is old and possibly incorrect."""
                                os.system("sendGfeMessage -u -c GFE -m '" + \
                                  msg + "'")
                                fd = open(cacheFilename + "-warn", 'wb')
                                fd.write(cPickle.dumps(time.time()))
                                fd.close()
                            break
    
                    time.sleep(15.0)   #sleep awhile and then try again
                    count = count + 1
                    logProblem("Retrying to getSendAddrs()", count)
        # qc the XML
        try:
            destTree = ElementTree.ElementTree(ElementTree.XML(xmlDestinations))
            destE = destTree.getroot()
        except:
            logProblem("Malformed XML on getSendAddrs() or provided xmlDest")
            logProblem("XML=", xmlDestinations)
            return
        #--------------------------------------------------------------------
        # determine how many transmissions are necessary
        #--------------------------------------------------------------------
        xmt = []

        logEvent("XML dest:", xmlDestinations)
        if destE.tag != "destinations":
            logProblem("Destinations packet missing from web service")
            return
            
        # create list of individual transmissions (before attempting to combine
        doClip = 1  #0 to send entire domain, 1 to do destination clipping (default)
        destStr = "Destination Servers:\n"
        for addressE in destE:
            if addressE.tag == "doclip":
                for name, value in addressE.items():
                    if name == "clip":
                        if value == "1":
                            doClip = 1
                        elif value == "0":
                            doClip = 0
    
        logEvent("Clipping State: ", doClip)
        
        for addressE in destE:

            if addressE.tag != "address":
                continue
            
            # find destination server info and domain information
            serverInfo = irt.decodeXMLAddress(addressE)
            
            if doClip == 0:
                serverInfo['domain'] = None
            keycheckfail = False
            for key in ['mhsid', 'host', 'port', 'protocol', 'site']:
                if not serverInfo.has_key(key):
                    logProblem("Fail to decode XML. Skipping serverInfo:",
                      serverInfo)
                    keycheckfail = True
                    continue
            if keycheckfail:
                continue   #skipping this destination due to insufficient info
           
            # get the destination office type
            try: 
                siteIndex = IFPServerConfigManager.getServerConfig(siteID).allSites().indexOf(serverInfo['site'])
                destOfficeType = str(IFPServerConfigManager.getServerConfig(siteID).officeTypes().get(siteIndex))
            except:
                logProblem("Unknown site id to get office type. ",
                  "Skipping serverInfo:", serverInfo)
                continue   #skipping this destination due to unknown site id

            # find weather elements that remote ifpServer wants
            # that is available in our server and in the -p parm switches
            any = False
            for parm in serverInfo['parms']:
                p1 = string.replace(parm, "_SFC", "")  #remove _SFC if exists

                # translation of parm name needed, also if no office type, then
                # not wanted from this office.
                #   example: changes QPFwfo to QPF if we are wfo
                #   example: discards T if we are wfo and site is non-wfo
                if myOfficeType != destOfficeType:
                    if p1.find(myOfficeType) != - 1:
                        p1 = string.replace(p1, myOfficeType, "") #remove type
                    else:
                        continue   #no type, so not intended for our type
                # see if parm was listed in the command line switches
                if parms.contains(p1):
                    xmt.append({'serverInfo':[serverInfo], 'parms':[p1],
                      'domain': serverInfo['domain'], 'area': serverInfo['area']})
                    if not any:
                        destStr += irt.printServerInfo(serverInfo) + "\n"
                        any = True
    
        logEvent(destStr)
        
        # now combine transmissions
        # find same domains, same parms, to combine servers/destinations
        i = 0
        while i < len(xmt):
            j = i + 1
            while j < len(xmt):
                if xmt[i]['domain'] == xmt[j]['domain'] and \
                  xmt[i]['area'] == xmt[j]['area'] and \
                  xmt[i]['parms'] == xmt[j]['parms']:
                    for si in xmt[j]['serverInfo']:
                        if si not in xmt[i]['serverInfo']:
                            dests = xmt[i]['serverInfo']
                            dests.append(si)
                            xmt[j]['serverInfo'] = dests
                    del xmt[j] #delete the entry
                    j = j - 1  #redo this entry index next loop
                j = j + 1
            i = i + 1
    
        # now try to combine common parm lists (same domain, same servers/destinations)
        i = 0
        while i < len(xmt):
            j = i + 1
            while j < len(xmt):
                if xmt[i]['domain'] == xmt[j]['domain'] and \
                  xmt[i]['area'] == xmt[j]['area'] and \
                  xmt[i]['serverInfo'] == xmt[j]['serverInfo'] :
                    iparms = xmt[i]['parms']
                    for p in xmt[j]['parms']:
                        if p not in iparms:
                            iparms.append(p)
                    xmt[i]['parms'] = iparms 
                    del xmt[j]  #delete the entry
                    j = j - 1  #redo this entry index for next loop
                j = j + 1
            i = i + 1

        # if doClip, gather some required information
        if doClip:
            #get the isc send area and grid domain from the ifpServer
            iscSendAreaGrid = iscUtil.getEditArea("ISC_Send_Area",siteID)           
            sourceDomain = IFPServerConfigManager.getServerConfig(siteID).dbDomain()
            
            iscSendAreaGrid.setGloc(sourceDomain)
            iscSendAreaGrid = iscSendAreaGrid.getGrid()

        
        #--------------------------------------------------------------------
        # prepare output files
        #--------------------------------------------------------------------
        for dest in xmt:
            s = "Processing Xmt Pass:\n"
            for sv in dest['serverInfo']:
                s += irt.printServerInfo(sv) + '\n'
            s += "Domain:" + `dest['domain']` + '\n'
            s += "Area:" + `dest['area']` + '\n'
            s += "Parms:" + `dest['parms']` + '\n\n'
            logEvent(s)
            # extract the data using ifpnetCDF
            if os.path.exists(siteConfig.GFESUITE_HOME + "/products/ISC") == False:
                os.makedirs(siteConfig.GFESUITE_HOME + "/products/ISC")
                
            tempfile.tempdir = siteConfig.GFESUITE_HOME + "/products/ISC" 
            fname = tempfile.mktemp(".isc") 
    
            # Determine domain edit area.
            
            if doClip == 1 and dest['domain'] is not None and \
              dest['domain']['proj'] == sourceDomain.getProjection().getProjectionID():
                #make a GridLocation for our domain
                gridSize = Coordinate(float(str(sourceDomain.getNx())), float(str(sourceDomain.getNy())))
                origin = sourceDomain.getOrigin()
                extent = sourceDomain.getExtent()
                domain = CartDomain2D(origin, extent)
                gloc = sourceDomain
                
                #make a GridLocation covering the area for the destination, expanded
                #by 1/2 grid cell 
                dd = dest['domain']
                da = dest['area']
                cellsizeX = float(dd['extx']) / (float(da['xdim']) - 1.0)
                cellsizeY = float(dd['exty']) / (float(da['ydim']) - 1.0)
                originD = Coordinate(float(dd['origx']) - cellsizeX / 2.0,
                  float(dd['origy']) - cellsizeY / 2.0)
                extentD = Coordinate(float(dd['extx']) + cellsizeX,
                  float(dd['exty']) + cellsizeY)
                domainD = CartDomain2D(originD, extentD) 

                #check for overlap
                if not domainD.overlaps(domain):
                    logEvent("No intersection of domain box, skipping....")
                    continue   #no bits set in the resulting mask, no intersect
    
                domainD.trim(domain)   #trim it to just the overlapping section
                
                
                gridSize  = Point(int(da['xdim']),int(da['ydim']))
                destGridLocation = GridLocation("Dest",sourceDomain.getProjection(),
                                                gridSize,domainD.getOrigin(),domainD.getExtent(),"GMT")
                                            
                # make a Reference Set
                refid = ReferenceID("jibberish")
                refSet = ReferenceData(gloc, refid, destGridLocation.getGeometry(), CoordinateType.LATLON)

                # convert destination site's domain to gridpoints
                iscMask = refSet.getGrid()
                
                # "and" it with our ISC_Send_Area
                iscMask.andEquals(iscSendAreaGrid)

                if not iscMask.isAnyBitsSet():
                    logEvent("No intersection of domain points, skipping....")
                    continue   #no bits set in the resulting mask, no intersect
    
                # store the grid back into the ifpServer
                maskName = "iscExtract" + `time.time()`
                refSet.setGrid(iscMask)
                iscUtil.saveEditAreaGrid(maskName, refSet, siteID)

            else:  #no clipping, or different projection
                maskName = "ISC_Send_Area"
    
            # Run ifpnetCDF for the data
            argv = {"outputFilename": fname, 
                    "parmList": dest['parms'],
                    "databaseID": dbid, 
                    "startTime": startTR,
                    "endTime": endTR, 
                    "mask": maskName, 
                    "geoInfo": False, 
                    "compressFileFlag": True, 
                    "configFileName": "iscSendSampleDef", 
                    "compressFileFactor": 6, 
                    "trim": True, 
                    "krunch": True, 
                    "userID": "iscExtract",
                    "logFileName": None,
                    "siteIdOverride": None}
            ifpnetCDF.main(**argv)
            
            fname = fname + '.gz'
            size = os.stat(fname)[stat.ST_SIZE]
            endT = time.time()
            logEvent('File Size: ', size)
            logEvent('After ifpnetCDF, ,wctime:', "%-6.2f" % (endT - startT),
                                   ',cputime:', "%-6.2f" % time.clock())
    
            # create XML destinations file for this output
            iscE = Element('isc')  #create the XML tree root
            sourceServer = {'mhsid': mhsid, 'host': serverHost, 'port': serverPort,
              'protocol': serverProtocol, 'site': siteID}
            irt.addSourceXML(iscE, sourceServer)
            irt.addDestinationXML(iscE, dest['serverInfo']) 
    
            #get the unique list of mhs sites 
            mhsSites = []
            for si in dest['serverInfo']:
                if si['mhsid'] not in mhsSites: 
                    mhsSites.append(si['mhsid']) 
    
            # create the XML file
            fnameXML = tempfile.mktemp(".xml")
            fd = open(fnameXML, 'wb')
            fd.write(ElementTree.tostring(iscE))   
            fd.close()
    
            # Transmit files - do string substitution
            irt.transmitFiles("ISCGRIDS2", mhsSites, mhsid, [fname,fnameXML], xmtScript)
            # Delete temporary files
            if maskName != "ISC_Send_Area": 
               iscUtil.deleteEditArea(maskName,siteID)
    
            endT = time.time() 
            logEvent('After transmission pass, ,wctime:',
              "%-6.2f" % (endT - startT), ',cputime:', "%-6.2f" % time.clock())
    
    except:
        logProblem("Failure", traceback.format_exc()) 
        
Esempio n. 13
0
    def process(self):
        import TimeRange
        # get list of edit areas that are part of the Zones/FireWx group
        from com.raytheon.viz.gfe.smarttool import TextFileUtil, GridCycler
        textID = TextFileUtil.getTextFile('Zones', 'editAreaGroups')
        zoneList = []
        textFile = open(textID.getFile().getPath())
        textFile.readline()
        for line in textFile:
            zoneList.append(line.rstrip())
        textFile.close()
        textID = TextFileUtil.getTextFile('FireWxZones', 'editAreaGroups')
        textFile = open(textID.getFile().getPath())
        textFile.readline()
        for line in textFile:
            zoneList.append(line.rstrip())              
        textFile.close()        

        refMgr = self.__dataMgr.getRefManager()
        # make the basic edit areas that are required, go sequentially through
        # the zoneList        
        requiredEA = ["west_half","east_half","east_one_third",
          "west_one_third", "east_two_thirds","west_two_thirds",
          "east_one_quarter", "west_one_quarter", "east_three_quarters",
          "west_three_quarters","SUPERIOR"]
        for x in xrange(len(requiredEA)):
            refData = refMgr.loadRefSet(ReferenceID(zoneList[x]))
            ea = ReferenceData(refData)
            ea.setId(ReferenceID(requiredEA[x]))
            refMgr.saveRefSet(ea)                
            #ea = self.__client.getEditAreaPolygons(zoneList[x])
            #self.__client.saveEditArea(requiredEA[x], ea)
            LogStream.logEvent("Saved ", zoneList[x], "under", requiredEA[x])

        # special EAs (source,destination)
        special = [("ISC_Send_Area","FireArea"), ("ISC_Send_Area", "area3")]
        for s in special:
            refData = refMgr.loadRefSet(ReferenceID(s[0]))
            ea = ReferenceData(refData)
            ea.setId(ReferenceID(s[1]))
            refMgr.saveRefSet(ea)             
            #ea = self.__client.getEditAreaPolygons(s[0])
            #self.__client.saveEditArea(s[1], ea)
            LogStream.logEvent("Saved ", s[0], "under", s[1])


        # topography simulated based edit areas
        # area3 = whole area, AboveElev, BelowElev
        LogStream.logEvent("Calculating topo-dependent edit areas...")        
        topo = self.__dataMgr.getParmManager().getParmInExpr("Topo", True)
        topogrid = GridCycler.getInstance().getCorrespondingResult(
                                topo, TimeRange.allTimes().toJavaObj(), "TimeWtAverage")
        topogrid = topogrid[0].getGridSlice().__numpy__[0]
        iscSend = ReferenceID('ISC_Send_Area') 
        #wholeGrid = self.__client.getEditArea("ISC_Send_Area")
        wholeGrid = refMgr.loadRefSet(iscSend).getGrid().__numpy__[0]
        topoAve = 0
        count = 0
        minx, maxx, miny, maxy = self.__extremaOfSetBits(wholeGrid)
        for x in range(minx, maxx):
            for y in range(miny, maxy): 
                if wholeGrid[y,x] == 1:
                    count = count + 1
                    topoAve = topoAve + topogrid[y,x]
        topoAve = topoAve / count
        aboveGrid = wholeGrid * 0
        belowGrid = wholeGrid * 0
        for x in xrange(topogrid.shape[1]):
            for y in xrange(topogrid.shape[0]):
                if wholeGrid[y,x] == 1:
                    if topogrid[y,x] > topoAve:
                        aboveGrid[y,x] = 1
                    else:
                        belowGrid[y,x] = 1
        # area1 and area2 need to be "BelowElev", but should be different
        # than area3
        desiredCount = 2000
        count = 0
        area1 = wholeGrid * 0
        area2 = wholeGrid * 0
        for x in xrange(topogrid.shape[1]):
            if count < desiredCount:
                for y in xrange(topogrid.shape[0]): 
                    if wholeGrid[y,x] == 0 and topogrid[y,x] < topoAve:
                        area1[y,x] = 1
                        belowGrid[y,x] = 1
                        count = count + 1
        count = 0
        for x in xrange(topogrid.shape[1]):
            if count < desiredCount:
                for y in xrange(topogrid.shape[0]): 
                    if wholeGrid[y,x] == 0 and topogrid[y,x] < topoAve and \
                      area1[y,x] == 0:
                        area2[y,x] = 1
                        belowGrid[y,x] = 1
                        count = count + 1
                
        # save all topography-dependent edit areas
        self.__saveEA("area1", area1)
        LogStream.logEvent("Saved area1 based on area2, area3, and topo <", 
          topoAve)
        self.__saveEA("area2", area2)
        LogStream.logEvent("Saved area2 based on area1, area3, and topo <", 
          topoAve)
        self.__saveEA("AboveElev", aboveGrid)
        LogStream.logEvent("Saved AboveElev based on area3 > ", topoAve)
        self.__saveEA("BelowElev", belowGrid)
        LogStream.logEvent("Saved BelowElev based on area3 <= ", topoAve)
        self.__saveEA("Ridges", aboveGrid)
        LogStream.logEvent("Saved Ridges based on area3 > ", topoAve)
        self.__saveEA("Valleys", belowGrid)
        LogStream.logEvent("Saved Valleys based on area3 < ", topoAve)
        self.__saveEA("Inland", aboveGrid)
        LogStream.logEvent("Saved Ridges based on area3 > ", topoAve)
        self.__saveEA("Coastal", belowGrid)
        LogStream.logEvent("Saved Valleys based on area3 < ", topoAve)


        #city areas, which are a small part of other edit areas
        cityBased = [("area1",["city1","city2"]), ("area2", ["city3"]),
          ("area3",["city4", "area3_pt"])]
        for baseArea,cityAreas in cityBased:
            #wholeGrid = self.__client.getEditArea(baseArea)
            wholeGrid = refMgr.loadRefSet(ReferenceID(baseArea)).getGrid().__numpy__[0]
            minx, maxx, miny, maxy = self.__extremaOfSetBits(wholeGrid)
            cNumber = 0 
            print minx, maxx, miny, maxy, wholeGrid.shape
            for x in range(minx, maxx):
                for y in range(miny, maxy): 
                    if wholeGrid[y,x] == 1:
                        if cNumber >= len(cityAreas):
                            break
                        cityGrid = numpy.logical_and(wholeGrid, 0)
                        cityGrid[y,x] = 1
                        self.__saveEA(cityAreas[cNumber], cityGrid.astype('int8'))
                        LogStream.logEvent("Saved ", cityAreas[cNumber], 
                          "based on:", baseArea)
                        cNumber = cNumber + 1

        # special for ISC areas for CCF database source test
        #txt = self.__eagdb["ISC"]
        #iscList = cPickle.loads(txt)
        textID = TextFileUtil.getTextFile('ISC', 'editAreaGroups')
        iscList = []
        textFile = open(textID.getFile().getPath())
        textFile.readline()
        for line in textFile:
            iscList.append(line.rstrip())
        textFile.close()
        count = 0
        while count < 6:
            for i in iscList:
                if i == "ISC_Send_Area" or i == "ISC_Tool_Area":
                    continue                
                wholeGrid = refMgr.loadRefSet(ReferenceID(i)).getGrid().__numpy__[0]                
                minx, maxx, miny, maxy = self.__extremaOfSetBits(wholeGrid)
                if minx == -1:
                    continue
                ok = 1
                print minx, maxx, miny, maxy, wholeGrid.shape
                for x in range(minx, maxx):
                    if ok:
                        for y in range(miny, maxy):
                            if wholeGrid[y,x] == 1:
                                ptGrid = numpy.logical_and(wholeGrid, 0)
                                ptGrid[y,x] = 1
                                name = "isc" + `count`
                                self.__saveEA(name, ptGrid.astype('int8'))
                                requiredEA.append(name)
                                LogStream.logEvent("Saved ", name, 
                                  "based on ", i)
                                ok = 0
                                break
                    else:
                        break
                            
                count = count + 1
                if count > 6:
                    break
 
        

        # store an edit area group with all of the generated edit areas                
        requiredEA.append("FireArea")
        requiredEA.append("AboveElev")
        requiredEA.append("BelowElev")
        requiredEA.append("Valleys")
        requiredEA.append("Ridges")
        requiredEA.append("Inland")
        requiredEA.append("Coastal")
        requiredEA.append("city1")
        requiredEA.append("city2")
        requiredEA.append("city3")
        requiredEA.append("city4")
        requiredEA.append("area3")
        requiredEA.append("area2")
        requiredEA.append("area1")
        
        refMgr.saveGroup("GFETest", JUtil.pylistToJavaStringList(requiredEA))
        
        time.sleep(.5)
Esempio n. 14
0
def executeIscExtract(parmNames, databaseName, startTime, endTime,
                      irtTableAddressA, irtTableAddressB, transmitScript, ourServerHost,
                      ourServerPort, ourServerProtocol, ourMHSid, ourSiteID, destinations=None):
    
    startT = time.time()
    parms = parmNames
    dbid = databaseName
    startTR = startTime
    endTR = endTime
    xmlDestinations = destinations
    ancf = irtTableAddressA
    bncf = irtTableAddressB
    xmtScript = transmitScript
    serverHost = ourServerHost
    serverPort = ourServerPort
    serverProtocol = ourServerProtocol
    mhsid = ourMHSid
    siteID = ourSiteID
    
    myOfficeType = IFPServerConfigManager.getServerConfig(siteID).officeType()
    
    
    #--------------------------------------------------------------------
    # determine the list of destination servers
    #--------------------------------------------------------------------
    try:
        nowT = time.time()   #current time
        useUntilTime = None  #cached use until time
        cacheFilename = "/tmp/" + serverHost + serverPort + ".iscExtract"
        cachedXmlDestinations = None
        #if xmlDestinations is None:    #destinations not on command line
        #    # check the cache 
        #    try:
        #        fd = open(cacheFilename, 'rb')
        #        buf = fd.read()
        #        fd.close()
        #        useUntilTime, cachedXmlDestinations = cPickle.loads(buf)
        #        nowT = time.time()   #current time
        #        if nowT > useUntilTime:
        #            xmlDestinations = None   #cache is too old
        #            useUntilTime = None
        #        else:
        #            logEvent('Using xmlDestinations cache')
        #            xmlDestinations = cachedXmlDestinations
        #    except:
        #        pass
            
            
        # need to contact IRT to get destinations
        irt = IrtAccess.IrtAccess(ancf, bncf)
        if xmlDestinations is None:
            logEvent('contacting IRT to get destinations')
            count = 1
            while True:
                status, xmlDestinations = irt.getSendAddrs(siteID)
                logEvent('IRT getSendAddrs status:', status)
                if status:
                    # if we obtained XML destinations from IRT, then decode
                    # the useUntilTime field
                    try:
                        d = ElementTree.ElementTree(ElementTree.XML(xmlDestinations))
                        dE = d.getroot()
                        for e in dE:
                            if e.tag == "useuntil":
                                isoTimeStr = e.text
                                idx = isoTimeStr.find(".") 
                                if idx != - 1:
                                    isoTimeStr = isoTimeStr[0:idx]  #eliminate subseconds
                                useUntilTime = time.mktime(time.strptime(isoTimeStr,
                                  "%Y-%m-%dT%H:%M:%S"))
                                logEvent("Use Until: ", isoTimeStr)
                    except:
                        logProblem("Malformed XML on getSendAddrs()")
                        logProblem("XML=", xmlDestinations)
                        return
                    if useUntilTime is None:
                        useUntilTime = time.time() + 180.0   #3 minutes default
                        logEvent("Using default 180 second useUntilTime")
    
                    # write the cache
                    fd = open(cacheFilename, 'wb')
                    buf = cPickle.dumps((useUntilTime, xmlDestinations))
                    fd.write(buf)
                    fd.close()
                    break   #success from the irt
                else:
                    # try again and again for 10 minutes, then use cache
                    # if available and alert GFE users
                    if time.time() - nowT > 600.00: 
                        logProblem("Unable to access IRT for send addrs")
                        if cachedXmlDestinations is None:
                            s = "Unable to access IRT for send addrs. Previous" + \
                              " cache not available."
                            logProblem(s)
                            return
                        # use cached value, even if out of date
                        else:
                            xmlDestinations = cachedXmlDestinations
                            if useUntilTime is not None:
                                s = time.asctime(time.gmtime(useUntilTime))
                            else:
                                s = "Unknown"
                            logProblem("Using expired cache. Date=", s)
    
                            #determine when we issued our last GFE alert
                            #we alert every 30 minutes.
                            try:
                                fd = open(cacheFilename + "-warn", 'rb')
                                buf = fd.read()
                                fd.close()
                                lastAlertTime = cPickle.loads(buf)
                            except:
                                lastAlertTime = 0  #for way long ago
                            if time.time() - lastAlertTime > 1800.0:
                                logProblem("Sending GFE notification")
                                msg = """
    Contact NCF. ifpServer is unable to contact IRT central server.  ISC
    traffic routing information is old and possibly incorrect."""
                                os.system("sendGfeMessage -u -c GFE -m '" + \
                                  msg + "'")
                                fd = open(cacheFilename + "-warn", 'wb')
                                fd.write(cPickle.dumps(time.time()))
                                fd.close()
                            break
    
                    time.sleep(15.0)   #sleep awhile and then try again
                    count = count + 1
                    logProblem("Retrying to getSendAddrs()", count)
        # qc the XML
        try:
            destTree = ElementTree.ElementTree(ElementTree.XML(xmlDestinations))
            destE = destTree.getroot()
        except:
            logProblem("Malformed XML on getSendAddrs() or provided xmlDest")
            logProblem("XML=", xmlDestinations)
            return
        #--------------------------------------------------------------------
        # determine how many transmissions are necessary
        #--------------------------------------------------------------------
        xmt = []

        logEvent("XML dest:", xmlDestinations)
        if destE.tag != "destinations":
            logProblem("Destinations packet missing from web service")
            return
            
        # create list of individual transmissions (before attempting to combine
        doClip = 1  #0 to send entire domain, 1 to do destination clipping (default)
        destStr = "Destination Servers:\n"
        for addressE in destE:
            if addressE.tag == "doclip":
                for name, value in addressE.items():
                    if name == "clip":
                        if value == "1":
                            doClip = 1
                        elif value == "0":
                            doClip = 0
    
        logEvent("Clipping State: ", doClip)
        
        for addressE in destE:

            if addressE.tag != "address":
                continue
            
            # find destination server info and domain information
            serverInfo = irt.decodeXMLAddress(addressE)
            
            if doClip == 0:
                serverInfo['domain'] = None
            keycheckfail = False
            for key in ['mhsid', 'host', 'port', 'protocol', 'site']:
                if not serverInfo.has_key(key):
                    logProblem("Fail to decode XML. Skipping serverInfo:",
                      serverInfo)
                    keycheckfail = True
                    continue
            if keycheckfail:
                continue   #skipping this destination due to insufficient info
           
            # get the destination office type
            try: 
                siteIndex = IFPServerConfigManager.getServerConfig(siteID).allSites().indexOf(serverInfo['site'])
                destOfficeType = str(IFPServerConfigManager.getServerConfig(siteID).officeTypes().get(siteIndex))
            except:
                logProblem("Unknown site id to get office type. ",
                  "Skipping serverInfo:", serverInfo)
                continue   #skipping this destination due to unknown site id

            # find weather elements that remote ifpServer wants
            # that is available in our server and in the -p parm switches
            any = False
            for parm in serverInfo['parms']:
                p1 = string.replace(parm, "_SFC", "")  #remove _SFC if exists

                # translation of parm name needed, also if no office type, then
                # not wanted from this office.
                #   example: changes QPFwfo to QPF if we are wfo
                #   example: discards T if we are wfo and site is non-wfo
                if myOfficeType != destOfficeType:
                    if p1.find(myOfficeType) != - 1:
                        p1 = string.replace(p1, myOfficeType, "") #remove type
                    else:
                        continue   #no type, so not intended for our type
                # see if parm was listed in the command line switches
                if parms.contains(p1):
                    xmt.append({'serverInfo':[serverInfo], 'parms':[p1],
                      'domain': serverInfo['domain'], 'area': serverInfo['area']})
                    if not any:
                        destStr += irt.printServerInfo(serverInfo) + "\n"
                        any = True
    
        logEvent(destStr)
        
        # now combine transmissions
        # find same domains, same parms, to combine servers/destinations
        i = 0
        while i < len(xmt):
            j = i + 1
            while j < len(xmt):
                if xmt[i]['domain'] == xmt[j]['domain'] and \
                  xmt[i]['area'] == xmt[j]['area'] and \
                  xmt[i]['parms'] == xmt[j]['parms']:
                    for si in xmt[j]['serverInfo']:
                        if si not in xmt[i]['serverInfo']:
                            dests = xmt[i]['serverInfo']
                            dests.append(si)
                            xmt[j]['serverInfo'] = dests
                    del xmt[j] #delete the entry
                    j = j - 1  #redo this entry index next loop
                j = j + 1
            i = i + 1
    
        # now try to combine common parm lists (same domain, same servers/destinations)
        i = 0
        while i < len(xmt):
            j = i + 1
            while j < len(xmt):
                if xmt[i]['domain'] == xmt[j]['domain'] and \
                  xmt[i]['area'] == xmt[j]['area'] and \
                  xmt[i]['serverInfo'] == xmt[j]['serverInfo'] :
                    iparms = xmt[i]['parms']
                    for p in xmt[j]['parms']:
                        if p not in iparms:
                            iparms.append(p)
                    xmt[i]['parms'] = iparms 
                    del xmt[j]  #delete the entry
                    j = j - 1  #redo this entry index for next loop
                j = j + 1
            i = i + 1

        # if doClip, gather some required information
        if doClip:
            #get the isc send area and grid domain from the ifpServer
            iscSendAreaGrid = iscUtil.getEditArea("ISC_Send_Area",siteID)           
            sourceDomain = IFPServerConfigManager.getServerConfig(siteID).dbDomain()
            
            iscSendAreaGrid.setGloc(sourceDomain)
            iscSendAreaGrid = iscSendAreaGrid.getGrid()

        
        #--------------------------------------------------------------------
        # prepare output files
        #--------------------------------------------------------------------
        for dest in xmt:
            s = "Processing Xmt Pass:\n"
            for sv in dest['serverInfo']:
                s += irt.printServerInfo(sv) + '\n'
            s += "Domain:" + `dest['domain']` + '\n'
            s += "Area:" + `dest['area']` + '\n'
            s += "Parms:" + `dest['parms']` + '\n\n'
            logEvent(s)
            # extract the data using ifpnetCDF
            if os.path.exists(siteConfig.GFESUITE_HOME + "/products/ISC") == False:
                os.makedirs(siteConfig.GFESUITE_HOME + "/products/ISC")
                
            tempfile.tempdir = siteConfig.GFESUITE_HOME + "/products/ISC" 
            fname = tempfile.mktemp(".isc") 
    
            # Determine domain edit area.
            
            if doClip == 1 and dest['domain'] is not None and \
              dest['domain']['proj'] == sourceDomain.getProjection().getProjectionID():
                #make a GridLocation for our domain
                gridSize = Coordinate(float(str(sourceDomain.getNx())), float(str(sourceDomain.getNy())))
                origin = sourceDomain.getOrigin()
                extent = sourceDomain.getExtent()
                domain = CartDomain2D(origin, extent)
                gloc = sourceDomain
                
                #make a GridLocation covering the area for the destination, expanded
                #by 1/2 grid cell 
                dd = dest['domain']
                da = dest['area']
                cellsizeX = float(dd['extx']) / (float(da['xdim']) - 1.0)
                cellsizeY = float(dd['exty']) / (float(da['ydim']) - 1.0)
                originD = Coordinate(float(dd['origx']) - cellsizeX / 2.0,
                  float(dd['origy']) - cellsizeY / 2.0)
                extentD = Coordinate(float(dd['extx']) + cellsizeX,
                  float(dd['exty']) + cellsizeY)
                domainD = CartDomain2D(originD, extentD) 

                #check for overlap
                if not domainD.overlaps(domain):
                    logEvent("No intersection of domain box, skipping....")
                    continue   #no bits set in the resulting mask, no intersect
    
                domainD.trim(domain)   #trim it to just the overlapping section
                
                
                gridSize  = Point(int(da['xdim']),int(da['ydim']))
                destGridLocation = GridLocation("Dest",sourceDomain.getProjection(),
                                                gridSize,domainD.getOrigin(),domainD.getExtent(),"GMT")
                                            
                # make a Reference Set
                refid = ReferenceID("jibberish")
                refSet = ReferenceData(gloc, refid, destGridLocation.getGeometry(), CoordinateType.LATLON)

                # convert destination site's domain to gridpoints
                iscMask = refSet.getGrid()
                
                # "and" it with our ISC_Send_Area
                iscMask.andEquals(iscSendAreaGrid)

                if not iscMask.isAnyBitsSet():
                    logEvent("No intersection of domain points, skipping....")
                    continue   #no bits set in the resulting mask, no intersect
    
                # store the grid back into the ifpServer
                maskName = "iscExtract" + `time.time()`
                refSet.setGrid(iscMask)
                iscUtil.saveEditAreaGrid(maskName, refSet, siteID)

            else:  #no clipping, or different projection
                maskName = "ISC_Send_Area"
    
            # Run ifpnetCDF for the data
            argv = {"outputFilename": fname, 
                    "parmList": dest['parms'],
                    "databaseID": dbid, 
                    "startTime": startTR,
                    "endTime": endTR, 
                    "mask": maskName, 
                    "geoInfo": False, 
                    "compressFileFlag": True, 
                    "configFileName": "iscSendSampleDef", 
                    "compressFileFactor": 6, 
                    "trim": True, 
                    "krunch": True, 
                    "userID": "iscExtract",
                    "logFileName": None}
            ifpnetCDF.main(**argv)
            
            fname = fname + '.gz'
            size = os.stat(fname)[stat.ST_SIZE]
            endT = time.time()
            logEvent('File Size: ', size)
            logEvent('After ifpnetCDF, ,wctime:', "%-6.2f" % (endT - startT),
                                   ',cputime:', "%-6.2f" % time.clock())
    
            # create XML destinations file for this output
            iscE = Element('isc')  #create the XML tree root
            sourceServer = {'mhsid': mhsid, 'host': serverHost, 'port': serverPort,
              'protocol': serverProtocol, 'site': siteID}
            irt.addSourceXML(iscE, sourceServer)
            irt.addDestinationXML(iscE, dest['serverInfo']) 
    
            #get the unique list of mhs sites 
            mhsSites = []
            for si in dest['serverInfo']:
                if si['mhsid'] not in mhsSites: 
                    mhsSites.append(si['mhsid']) 
    
            # create the XML file
            fnameXML = tempfile.mktemp(".xml")
            fd = open(fnameXML, 'wb')
            fd.write(ElementTree.tostring(iscE))   
            fd.close()
    
            # Transmit files - do string substitution
            irt.transmitFiles("ISCGRIDS2", mhsSites, mhsid, [fname,fnameXML], xmtScript)
            # Delete temporary files
            if maskName != "ISC_Send_Area": 
               iscUtil.deleteEditArea(maskName,siteID)
    
            endT = time.time() 
            logEvent('After transmission pass, ,wctime:',
              "%-6.2f" % (endT - startT), ',cputime:', "%-6.2f" % time.clock())
    
    except:
        logProblem("Failure", traceback.format_exc()) 
        
Esempio n. 15
0
    def process(self):
        import TimeRange
        # get list of edit areas that are part of the Zones/FireWx group
        from com.raytheon.viz.gfe.smarttool import TextFileUtil, GridCycler
        textID = TextFileUtil.getTextFile('Zones', 'editAreaGroups')
        zoneList = []
        textFile = open(textID.getFile().getPath())
        textFile.readline()
        for line in textFile:
            zoneList.append(line.rstrip())
        textFile.close()
        textID = TextFileUtil.getTextFile('FireWxZones', 'editAreaGroups')
        textFile = open(textID.getFile().getPath())
        textFile.readline()
        for line in textFile:
            zoneList.append(line.rstrip())
        textFile.close()

        refMgr = self.__dataMgr.getRefManager()
        # make the basic edit areas that are required, go sequentially through
        # the zoneList
        requiredEA = [
            "west_half", "east_half", "east_one_third", "west_one_third",
            "east_two_thirds", "west_two_thirds", "east_one_quarter",
            "west_one_quarter", "east_three_quarters", "west_three_quarters",
            "Superior"
        ]
        for x in xrange(len(requiredEA)):
            refData = refMgr.loadRefSet(ReferenceID(zoneList[x]))
            ea = ReferenceData(refData)
            ea.setId(ReferenceID(requiredEA[x]))
            refMgr.saveRefSet(ea)
            #ea = self.__client.getEditAreaPolygons(zoneList[x])
            #self.__client.saveEditArea(requiredEA[x], ea)
            LogStream.logEvent("Saved ", zoneList[x], "under", requiredEA[x])

        # special EAs (source,destination)
        special = [("ISC_Send_Area", "FireArea"), ("ISC_Send_Area", "area3")]
        for s in special:
            refData = refMgr.loadRefSet(ReferenceID(s[0]))
            ea = ReferenceData(refData)
            ea.setId(ReferenceID(s[1]))
            refMgr.saveRefSet(ea)
            #ea = self.__client.getEditAreaPolygons(s[0])
            #self.__client.saveEditArea(s[1], ea)
            LogStream.logEvent("Saved ", s[0], "under", s[1])

        # topography simulated based edit areas
        # area3 = whole area, AboveElev, BelowElev
        LogStream.logEvent("Calculating topo-dependent edit areas...")
        topo = self.__dataMgr.getParmManager().getParmInExpr("Topo", True)
        topogrid = GridCycler.getInstance().getCorrespondingResult(
            topo,
            TimeRange.allTimes().toJavaObj(), "TimeWtAverage")
        topogrid = topogrid[0].getGridSlice().getNDArray()
        iscSend = ReferenceID('ISC_Send_Area')
        #wholeGrid = self.__client.getEditArea("ISC_Send_Area")
        wholeGrid = refMgr.loadRefSet(iscSend).getGrid().getNDArray()
        topoAve = 0
        count = 0
        minx, maxx, miny, maxy = self.__extremaOfSetBits(wholeGrid)
        for x in range(minx, maxx):
            for y in range(miny, maxy):
                if wholeGrid[y, x] == 1:
                    count = count + 1
                    topoAve = topoAve + topogrid[y, x]
        topoAve = topoAve / count
        aboveGrid = wholeGrid * 0
        belowGrid = wholeGrid * 0
        for x in xrange(topogrid.shape[1]):
            for y in xrange(topogrid.shape[0]):
                if wholeGrid[y, x] == 1:
                    if topogrid[y, x] > topoAve:
                        aboveGrid[y, x] = 1
                    else:
                        belowGrid[y, x] = 1
        # area1 and area2 need to be "BelowElev", but should be different
        # than area3
        desiredCount = 2000
        count = 0
        area1 = wholeGrid * 0
        area2 = wholeGrid * 0
        for x in xrange(topogrid.shape[1]):
            if count < desiredCount:
                for y in xrange(topogrid.shape[0]):
                    if wholeGrid[y, x] == 0 and topogrid[y, x] < topoAve:
                        area1[y, x] = 1
                        belowGrid[y, x] = 1
                        count = count + 1
        count = 0
        for x in xrange(topogrid.shape[1]):
            if count < desiredCount:
                for y in xrange(topogrid.shape[0]):
                    if wholeGrid[y,x] == 0 and topogrid[y,x] < topoAve and \
                      area1[y,x] == 0:
                        area2[y, x] = 1
                        belowGrid[y, x] = 1
                        count = count + 1

        # save all topography-dependent edit areas
        self.__saveEA("area1", area1)
        LogStream.logEvent("Saved area1 based on area2, area3, and topo <",
                           topoAve)
        self.__saveEA("area2", area2)
        LogStream.logEvent("Saved area2 based on area1, area3, and topo <",
                           topoAve)
        self.__saveEA("AboveElev", aboveGrid)
        LogStream.logEvent("Saved AboveElev based on area3 > ", topoAve)
        self.__saveEA("BelowElev", belowGrid)
        LogStream.logEvent("Saved BelowElev based on area3 <= ", topoAve)
        self.__saveEA("Ridges", aboveGrid)
        LogStream.logEvent("Saved Ridges based on area3 > ", topoAve)
        self.__saveEA("Valleys", belowGrid)
        LogStream.logEvent("Saved Valleys based on area3 < ", topoAve)
        self.__saveEA("Inland", aboveGrid)
        LogStream.logEvent("Saved Ridges based on area3 > ", topoAve)
        self.__saveEA("Coastal", belowGrid)
        LogStream.logEvent("Saved Valleys based on area3 < ", topoAve)

        #city areas, which are a small part of other edit areas
        cityBased = [("area1", ["city1", "city2"]), ("area2", ["city3"]),
                     ("area3", ["city4", "area3_pt"])]
        for baseArea, cityAreas in cityBased:
            #wholeGrid = self.__client.getEditArea(baseArea)
            wholeGrid = refMgr.loadRefSet(
                ReferenceID(baseArea)).getGrid().getNDArray()
            minx, maxx, miny, maxy = self.__extremaOfSetBits(wholeGrid)
            cNumber = 0
            print minx, maxx, miny, maxy, wholeGrid.shape
            for x in range(minx, maxx):
                for y in range(miny, maxy):
                    if wholeGrid[y, x] == 1:
                        if cNumber >= len(cityAreas):
                            break
                        cityGrid = numpy.logical_and(wholeGrid, 0)
                        cityGrid[y, x] = 1
                        self.__saveEA(cityAreas[cNumber],
                                      cityGrid.astype('int8'))
                        LogStream.logEvent("Saved ", cityAreas[cNumber],
                                           "based on:", baseArea)
                        cNumber = cNumber + 1

        # special for ISC areas for CCF database source test
        #txt = self.__eagdb["ISC"]
        #iscList = cPickle.loads(txt)
        textID = TextFileUtil.getTextFile('ISC', 'editAreaGroups')
        iscList = []
        textFile = open(textID.getFile().getPath())
        textFile.readline()
        for line in textFile:
            iscList.append(line.rstrip())
        textFile.close()
        count = 0
        while count < 6:
            for i in iscList:
                if i == "ISC_Send_Area" or i == "ISC_Tool_Area":
                    continue
                wholeGrid = refMgr.loadRefSet(
                    ReferenceID(i)).getGrid().getNDArray()
                minx, maxx, miny, maxy = self.__extremaOfSetBits(wholeGrid)
                if minx == -1:
                    continue
                ok = 1
                print minx, maxx, miny, maxy, wholeGrid.shape
                for x in range(minx, maxx):
                    if ok:
                        for y in range(miny, maxy):
                            if wholeGrid[y, x] == 1:
                                ptGrid = numpy.logical_and(wholeGrid, 0)
                                ptGrid[y, x] = 1
                                name = "isc" + ` count `
                                self.__saveEA(name, ptGrid.astype('int8'))
                                requiredEA.append(name)
                                LogStream.logEvent("Saved ", name, "based on ",
                                                   i)
                                ok = 0
                                break
                    else:
                        break

                count = count + 1
                if count > 6:
                    break

        # store an edit area group with all of the generated edit areas
        requiredEA.append("FireArea")
        requiredEA.append("AboveElev")
        requiredEA.append("BelowElev")
        requiredEA.append("Valleys")
        requiredEA.append("Ridges")
        requiredEA.append("Inland")
        requiredEA.append("Coastal")
        requiredEA.append("city1")
        requiredEA.append("city2")
        requiredEA.append("city3")
        requiredEA.append("city4")
        requiredEA.append("area3")
        requiredEA.append("area2")
        requiredEA.append("area1")

        refMgr.saveGroup("GFETest", JUtil.pylistToJavaStringList(requiredEA))

        time.sleep(.5)