Esempi in Python per assert_metric

Esempio n. 1

#!/usr/bin/python

import os
from common import run_quast, contigs_1k_2, reference_1k, assert_metric

name = os.path.basename(__file__)[5:-3]


run_quast(name, contigs=[contigs_1k_2], params='-R ' + reference_1k + ' -G genes_1k.txt')
assert_metric(name, '# genes', ['1 + 1 part'])

Esempio n. 2

File: test_genes_ids_vary.py Progetto: trocialba/quast

#!/usr/bin/python

import os
from common import run_quast, contigs_1k_2, reference_1k, assert_metric

name = os.path.basename(__file__)[5:-3]


run_quast(name, contigs=[contigs_1k_2], params='-R ' + reference_1k + ' -G genes_1k_ids_differ.txt')
assert_metric(name, '# genomic features', ['0 + 1 part'])

Esempio n. 3

File: test_reference.py Progetto: svpipaliya/quast

#!/usr/bin/python

import os
from common import run_quast, contigs_1k_2, assert_metric

name = os.path.basename(__file__)[5:-3]

run_quast(name, contigs=[contigs_1k_2], params='-R reference_1k.fa')
assert_metric(name, 'NGA50', ['760'])

run_quast(name, contigs=[contigs_1k_2], params='-R reference_1k.fa.gz')
assert_metric(name, 'NGA50', ['760'])