def __init__(self, URL=None, **attributes):
if URL == None:
URL = "workflow://" + __file__ + "/%d" % id(self)
self._pypeObjects = {}
PypeObject.__init__(self, URL, **attributes)
self._referenceRDFGraph = None #place holder for a reference RDF
def __init__(self, URL = None, **attributes ):
if URL == None:
URL = "workflow://" + __file__+"/%d" % id(self)
self._pypeObjects = {}
PypeObject.__init__(self, URL, **attributes)
self._referenceRDFGraph = None #place holder for a reference RDF
def __init__(self, URL, *argv, **kwargv):
"""
Constructor of a PypeTask.
"""
PypeObject.__init__(self, URL, **kwargv)
self._argv = argv
self._kwargv = kwargv
self._taskFun = kwargv['_taskFun']
self._referenceMD5 = None
self._status = TaskInitialized
self._queue = None
self.shutdown_event = None
for defaultAttr in [
"inputDataObjs", "outputDataObjs", "parameters",
"mutableDataObjs"
]:
if defaultAttr not in self.__dict__:
self.__dict__[defaultAttr] = {}
# "input" and "output" short cut
if "inputs" in kwargv:
self.inputDataObjs.update(kwargv["inputs"])
del kwargv["inputs"]
if "outputs" in kwargv:
self.outputDataObjs.update(kwargv["outputs"])
del kwargv["outputs"]
if "mutables" in kwargv:
self.mutableDataObjs.update(kwargv["mutables"])
del kwargv["mutables"]
#the keys in inputDataObjs/outputDataObjs/parameters will become a task attribute
for defaultAttr in [
"inputDataObjs", "outputDataObjs", "mutableDataObjs",
"parameters"
]:
vars(self).update(self.__dict__[defaultAttr])
if "chunk_id" in kwargv:
self.chunk_id = kwargv["chunk_id"]
self._codeMD5digest = kwargv.get("_codeMD5digest", "")
self._paramMD5digest = kwargv.get("_paramMD5digest", "")
self._compareFunctions = kwargv.get("_compareFunctions",
[timeStampCompare])
for o in self.outputDataObjs.values():
if o.readOnly == True:
raise PypeError, "Cannot assign read only data object %s for task %s" % (
o.URL, self.URL)
def __init__(self, URL, *argv, **kwargv):
"""
Constructor of a PypeTask.
"""
PypeObject.__init__(self, URL, **kwargv)
self._argv = argv
self._kwargv = kwargv
self._taskFun = kwargv['_taskFun']
self._referenceMD5 = None
self._status = TaskInitialized
self._queue = None
self.shutdown_event = None
for defaultAttr in ["inputDataObjs", "outputDataObjs", "parameters", "mutableDataObjs"]:
if defaultAttr not in self.__dict__:
self.__dict__[defaultAttr] = {}
# "input" and "output" short cut
if "inputs" in kwargv:
self.inputDataObjs.update(kwargv["inputs"])
del kwargv["inputs"]
if "outputs" in kwargv:
self.outputDataObjs.update(kwargv["outputs"])
del kwargv["outputs"]
if "mutables" in kwargv:
self.mutableDataObjs.update(kwargv["mutables"])
del kwargv["mutables"]
#the keys in inputDataObjs/outputDataObjs/parameters will become a task attribute
for defaultAttr in ["inputDataObjs", "outputDataObjs", "mutableDataObjs", "parameters"]:
vars(self).update(self.__dict__[defaultAttr])
if "chunk_id" in kwargv:
self.chunk_id = kwargv["chunk_id"]
self._codeMD5digest = kwargv.get("_codeMD5digest", "")
self._paramMD5digest = kwargv.get("_paramMD5digest", "")
self._compareFunctions = kwargv.get("_compareFunctions", [ timeStampCompare ])
for o in self.outputDataObjs.values():
if o.readOnly == True:
raise PypeError, "Cannot assign read only data object %s for task %s" % (o.URL, self.URL)
def __init__(self, URL, tasks = [], scatterGatherTasks = [], **kwargv):
PypeObject.__init__(self, URL, **kwargv)
self._tasks = tasks[:]
self._scatterGatherTasks = scatterGatherTasks[:]
def __init__(self, URL, **attributes):
PypeObject.__init__(self, URL, **attributes)
self.verification = []
self._mutatble = False
def __init__(self, URL, **attributes):
PypeObject.__init__(self, URL, **attributes)
self.verification = []
self._mutatble = False
def __init__(self, URL, tasks=[], scatterGatherTasks=[], **kwargv):
PypeObject.__init__(self, URL, **kwargv)
self._tasks = tasks[:]
self._scatterGatherTasks = scatterGatherTasks[:]
