def run_structmaker(run_id):
'''
So that output files can be located by family,
run_ids should have a consistent format:
RS_{familyname}
In any event, the family name is stored in the
input dict so there will be no problems running the
script is the run_id does not conform to this format.
'''
inp_dict = bsub.load_data(run_id, 'input')
fam = inp_dict['family']
savename = inp_dict['savename']
structs, energies, seq = rutils.family_clustered_suboptimals(\
fam,
savename = savename,
draw = True)
output = {'family':fam,
'structs':structs,
'energies':energies,
'seq':seq}
return output
def run_structmaker(run_id):
'''
So that output files can be located by family,
run_ids should have a consistent format:
RS_{familyname}
In any event, the family name is stored in the
input dict so there will be no problems running the
script is the run_id does not conform to this format.
'''
inp_dict = bsub.load_data(run_id, 'input')
fam = inp_dict['family']
savename = inp_dict['savename']
structs, energies, seq = rutils.family_clustered_suboptimals(\
fam,
savename = savename,
draw = True)
output = {
'family': fam,
'structs': structs,
'energies': energies,
'seq': seq
}
return output
def run_treebuilder(run_id):
'''
So that output files can be located by family,
run_ids should have a consistent format:
RS_{familyname}
In any event, the family name is stored in the
input dict so there will be no problems running the
script is the run_id does not conform to this format.
'''
inp_dict = bsub.load_data(run_id, 'input')
inp_run_id = inp_dict['inp_run_id']
rfid = inp_dict['family']
output = tutils.run(rfid, run_id, inp_run_id, reset=True)
return output
def run_treebuilder(run_id):
'''
So that output files can be located by family,
run_ids should have a consistent format:
RS_{familyname}
In any event, the family name is stored in the
input dict so there will be no problems running the
script is the run_id does not conform to this format.
'''
inp_dict = bsub.load_data(run_id, 'input')
inp_run_id = inp_dict['inp_run_id']
rfid = inp_dict['family']
output = tutils.run(rfid,run_id, inp_run_id, reset = True)
return output