# from time import sleep
import logging
import concert
# Miscellaneous imports
from numpy import linspace
import yaml
import time
import argparse
import os
import numpy as np
from datetime import date
# Dark style
# noinspection PyUnresolvedReferences
from styles.breeze import styles_breeze
from edc import log
concert.require("0.11.0")
def process_cl_args():
parser = argparse.ArgumentParser()
parser.add_argument('-d', '--debug', action='store_const',
const=True) # optional flags
parsed_args, unparsed_args = parser.parse_known_args()
return parsed_args, unparsed_args
class GUI(QDialog):
'''
Creates main GUI, holds references to physical devices, and
provides start/abort controls for Concert scans, and holds
4 groups where parameters can be entered
"""---\nThis session shows how to implement a simple zig-zag scan using
two motors for horizontal (x_motor) and vertical movement (z_motor) as well as
a detector. The result is an image composed of all scanned tiles."""
import concert
concert.require('0.8')
import numpy as np
import scipy.misc
import matplotlib.pyplot as plt
from concert.quantities import q
from concert.session.utils import ddoc, dstate, pdoc
from concert.devices.cameras.dummy import Camera
from concert.devices.motors.dummy import LinearMotor
# Create a camera with noisy background
camera = Camera(background=scipy.misc.lena())
# Assume motors' zero coordinate is left and up respectively
x_motor = LinearMotor()
z_motor = LinearMotor()
def zig_zag_scan(num_images_horizontally=2, num_images_vertically=2,
pixel_size=5*q.micrometer):
x_motor.position = 0 * q.micrometer
z_motor.position = 0 * q.micrometer
width = pixel_size * camera.roi_width
height = pixel_size * camera.roi_height
"""---\nThis is session uca-check."""
import concert
concert.require("0.10.0")
import sys
import inspect
import numpy as np
from concert.quantities import q
from concert.session.utils import ddoc, dstate, pdoc
from concert.devices.cameras.uca import Camera
try:
from clint.textui import colored
_clint_available = True
except ImportError:
_clint_available = False
def acquire_frame(camera):
camera.start_recording()
frame = camera.grab()
camera.stop_recording()
return frame
def test_bit_depth_consistency(camera):
camera.exposure_time = 1 * q.s
frame = acquire_frame(camera)
bits = camera.sensor_bitdepth
"""---\nDemonstrating Concert capabilities."""
import concert
concert.require("0.6")
import numpy as np
from concert.quantities import q
from concert.session.utils import ddoc, dstate, pdoc, code_of
from concert.devices.cameras.dummy import Camera
from concert.devices.motors.dummy import LinearMotor
from concert.devices.storagerings.dummy import StorageRing
ring = StorageRing()
motor = LinearMotor()
camera = Camera()
import concert
concert.require("0.9.0")
import timeit
N_SETS = 1000
N_RUNS = 3
setup_futures = """
from concert.quantities import q
from concert.async import wait
from concert.devices.motors.dummy import LinearMotor
m = LinearMotor()
def test_set_position():
futures = [m.set_position(0 * q.mm) for i in range({})]
wait(futures)
""".format(N_SETS)
setup_raw = """
from concert.quantities import q
from concert.async import wait
from concert.devices.motors.dummy import LinearMotor
m = LinearMotor()
def test_set_position():
for i in range({}):
m.position = 0 * q.mm
""".format(N_SETS)
"""---\nThis session demonstrates reconstruction with the UFO data
processing framework."""
import concert
concert.require("0.11.0")
import numpy as np
from gi.repository import Ufo
from concert.quantities import q
from concert.session.utils import ddoc, dstate, pdoc
from concert.ext.ufo import PluginManager, InjectProcess
from concert.devices.cameras.dummy import Camera
def acquire(camera, num_frames):
camera.start_recording()
for i in xrange(num_frames):
yield camera.grab()
def reconstruct_from(camera):
pm = PluginManager()
fft = pm.get_task('fft', dimensions=1)
ifft = pm.get_task('ifft', dimensions=1)
fltr = pm.get_task('filter')
bp = pm.get_task('backproject')
writer = pm.get_task('write')
graph = Ufo.TaskGraph()