def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, 'conda-meta', dname + '.json')
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get('url')
fn = rec.get('fn')
if not fn:
fn = rec['fn'] = url.rsplit('/', 1)[-1] if url else dname + '.tar.bz2'
if fn[:-8] != dname:
log.debug('Ignoring invalid package metadata file: %s' % meta_file)
return None
channel = rec.get('channel')
if channel:
channel = channel.rstrip('/')
if not url or (url.startswith('file:') and channel[0] != '<unknown>'):
url = rec['url'] = channel + '/' + fn
channel, schannel = url_channel(url)
rec['url'] = url
rec['channel'] = channel
rec['schannel'] = schannel
rec['link'] = rec.get('link') or True
cprefix = '' if schannel == 'defaults' else schannel + '::'
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, "conda-meta", dname + ".json")
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get("url")
fn = rec.get("fn")
if not fn:
fn = rec["fn"] = url.rsplit("/", 1)[-1] if url else dname + ".tar.bz2"
if fn[:-8] != dname:
log.debug("Ignoring invalid package metadata file: %s" % meta_file)
return None
channel = rec.get("channel")
if channel:
channel = channel.rstrip("/")
if not url or (url.startswith("file:") and channel[0] != "<unknown>"):
url = rec["url"] = channel + "/" + fn
channel, schannel = url_channel(url)
rec["url"] = url
rec["channel"] = channel
rec["schannel"] = schannel
rec["link"] = rec.get("link") or True
cprefix = "" if schannel == "defaults" else schannel + "::"
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, 'conda-meta', dname + '.json')
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get('url')
fn = rec.get('fn')
if not fn:
fn = rec['fn'] = url.rsplit('/', 1)[-1] if url else dname + '.tar.bz2'
if fn[:-8] != dname:
log.debug('Ignoring invalid package metadata file: %s' % meta_file)
return None
channel = rec.get('channel')
if channel:
channel = channel.rstrip('/')
if not url or (url.startswith('file:') and channel[0] != '<unknown>'):
url = rec['url'] = channel + '/' + fn
channel, schannel = url_channel(url)
rec['url'] = url
rec['channel'] = channel
rec['schannel'] = schannel
rec['link'] = rec.get('link') or True
cprefix = '' if schannel == 'defaults' else schannel + '::'
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def load_linked_data(prefix, dist, rec=None):
schannel, dname = dist2pair(dist)
meta_file = join(prefix, 'conda-meta', dname + '.json')
if rec is None:
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get('url')
if 'fn' not in rec:
rec['fn'] = url.rsplit('/', 1)[-1] if url else dname + '.tar.bz2'
if not url and 'channel' in rec:
url = rec['url'] = rec['channel'] + rec['fn']
if rec['fn'][:-8] != dname:
log.debug('Ignoring invalid package metadata file: %s' % meta_file)
return None
channel, schannel = url_channel(url)
rec['channel'] = channel
rec['schannel'] = schannel
cprefix = '' if schannel == 'defaults' else schannel + '::'
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def add_cached_package(pdir, url, overwrite=False, urlstxt=False):
"""
Adds a new package to the cache. The URL is used to determine the
package filename and channel, and the directory pdir is scanned for
both a compressed and an extracted version of that package. If
urlstxt=True, this URL will be appended to the urls.txt file in the
cache, so that subsequent runs will correctly identify the package.
"""
package_cache()
if '/' in url:
dist = url.rsplit('/', 1)[-1]
else:
dist = url
url = None
if dist.endswith('.tar.bz2'):
fname = dist
dist = dist[:-8]
else:
fname = dist + '.tar.bz2'
xpkg = join(pdir, fname)
if not overwrite and xpkg in fname_table_:
return
if not isfile(xpkg):
xpkg = None
xdir = join(pdir, dist)
if not (isdir(xdir) and
isfile(join(xdir, 'info', 'files')) and
isfile(join(xdir, 'info', 'index.json'))):
xdir = None
if not (xpkg or xdir):
return
if url:
url = remove_binstar_tokens(url)
_, schannel = url_channel(url)
prefix = '' if schannel == 'defaults' else schannel + '::'
xkey = xpkg or (xdir + '.tar.bz2')
fname_table_[xkey] = fname_table_[url_path(xkey)] = prefix
fkey = prefix + dist
rec = package_cache_.get(fkey)
if rec is None:
rec = package_cache_[fkey] = dict(files=[], dirs=[], urls=[])
if url and url not in rec['urls']:
rec['urls'].append(url)
if xpkg and xpkg not in rec['files']:
rec['files'].append(xpkg)
if xdir and xdir not in rec['dirs']:
rec['dirs'].append(xdir)
if urlstxt:
try:
with open(join(pdir, 'urls.txt'), 'a') as fa:
fa.write('%s\n' % url)
except IOError:
pass
def add_cached_package(pdir, url, overwrite=False, urlstxt=False):
"""
Adds a new package to the cache. The URL is used to determine the
package filename and channel, and the directory pdir is scanned for
both a compressed and an extracted version of that package. If
urlstxt=True, this URL will be appended to the urls.txt file in the
cache, so that subsequent runs will correctly identify the package.
"""
package_cache()
if "/" in url:
dist = url.rsplit("/", 1)[-1]
else:
dist = url
url = None
if dist.endswith(".tar.bz2"):
fname = dist
dist = dist[:-8]
else:
fname = dist + ".tar.bz2"
xpkg = join(pdir, fname)
if not overwrite and xpkg in fname_table_:
return
if not isfile(xpkg):
xpkg = None
xdir = join(pdir, dist)
if not (isdir(xdir) and isfile(join(xdir, "info", "files")) and isfile(join(xdir, "info", "index.json"))):
xdir = None
if not (xpkg or xdir):
return
if url:
url = remove_binstar_tokens(url)
_, schannel = url_channel(url)
prefix = "" if schannel == "defaults" else schannel + "::"
xkey = xpkg or (xdir + ".tar.bz2")
fname_table_[xkey] = fname_table_[path_to_url(xkey)] = prefix
fkey = prefix + dist
rec = package_cache_.get(fkey)
if rec is None:
rec = package_cache_[fkey] = dict(files=[], dirs=[], urls=[])
if url and url not in rec["urls"]:
rec["urls"].append(url)
if xpkg and xpkg not in rec["files"]:
rec["files"].append(xpkg)
if xdir and xdir not in rec["dirs"]:
rec["dirs"].append(xdir)
if urlstxt:
try:
with open(join(pdir, "urls.txt"), "a") as fa:
fa.write("%s\n" % url)
except IOError:
pass
def load_linked_data(prefix, dist, rec=None):
schannel, dname = _dist2pair(dist)
if rec is None:
meta_file = join(prefix, 'conda-meta', dname + '.json')
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
_, schannel = url_channel(rec.get('url'))
else:
linked_data(prefix)
rec['schannel'] = schannel
cprefix = '' if schannel == 'defaults' else schannel + '::'
rec['fn'] = dname + '.tar.bz2'
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def load_linked_data(prefix, dist, rec=None):
schannel, dname = _dist2pair(dist)
if rec is None:
meta_file = join(prefix, 'conda-meta', dname + '.json')
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get('url')
channel, schannel = url_channel(url)
if 'fn' not in rec:
rec['fn'] = url.rsplit('/', 1)[-1] if url else dname + '.tar.bz2'
rec['channel'] = channel
rec['schannel'] = schannel
cprefix = '' if schannel == 'defaults' else schannel + '::'
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def load_linked_data(prefix, dist, rec=None):
schannel, dname = _dist2pair(dist)
if rec is None:
meta_file = join(prefix, 'conda-meta', dname + '.json')
try:
with open(meta_file) as fi:
rec = json.load(fi)
except IOError:
return None
else:
linked_data(prefix)
url = rec.get('url')
channel, schannel = url_channel(url)
if 'fn' not in rec:
rec['fn'] = url.rsplit('/', 1)[-1] if url else dname + '.tar.bz2'
rec['channel'] = channel
rec['schannel'] = schannel
cprefix = '' if schannel == 'defaults' else schannel + '::'
linked_data_[prefix][str(cprefix + dname)] = rec
return rec
def add_unknown(index, priorities):
maxp = max(itervalues(priorities)) + 1 if priorities else 1
for fkey, info in iteritems(package_cache()):
if fkey in index or not info['dirs']:
continue
try:
with open(join(info['dirs'][0], 'info', 'index.json')) as fi:
meta = json.load(fi)
except IOError:
continue
fname = dist2filename(fkey)
if info['urls']:
url = info['urls'][0]
elif 'url' in meta:
url = meta['url']
else:
url = meta.get('channel', '<unknown>/') + fname
channel, schannel = url_channel(url)
priority = priorities.get(schannel, maxp)
meta.update({'fn': fname, 'url': url, 'channel': channel,
'schannel': channel, 'priority': priority})
meta.setdefault('depends', [])
log.debug("adding cached pkg to index: %s" % url)
index[url] = meta
def explicit(specs, prefix, verbose=False, force_extract=True, fetch_args=None):
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions['op_order'] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {install.name_dist(dist): dist for dist in install.linked(prefix)}
fetch_args = fetch_args or {}
index = {}
verifies = []
channels = {}
for spec in specs:
if spec == '@EXPLICIT':
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit('Could not parse explicit URL: %s' % spec)
url, md5 = m.group('url') + '/' + m.group('fn'), m.group('md5')
if not is_url(url):
if not isfile(url):
sys.exit('Error: file not found: %s' % url)
url = utils.url_path(url)
url_p, fn = url.rsplit('/', 1)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url_p.startswith('file://'):
prefix = install.cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
_, schannel = url_channel(url)
prefix = '' if schannel == 'defaults' else schannel + '::'
fn = prefix + fn
dist = fn[:-8]
pkg_path = install.is_fetched(dist)
dir_path = install.is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
if pkg_path and (md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = install.find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
actions[FETCH].append(dist)
if md5:
# Need to verify against the package index
verifies.append((dist + '.tar.bz2', md5))
channels[url_p + '/'] = (schannel, 0)
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = install.name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Finish the MD5 verification
if verifies:
index = fetch_index(channels, **fetch_args)
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if 'md5' not in info:
sys.stderr.write('Warning: cannot lookup MD5 of: %s' % fn)
if info['md5'] != md5:
sys.exit(
'MD5 mismatch for: %s\n spec: %s\n repo: %s'
% (fn, md5, info['md5']))
execute_actions(actions, index=index, verbose=verbose)
return actions
def clone_env(prefix1, prefix2, verbose=True, quiet=False, fetch_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = install.linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info['name']
if name in filter:
continue
if name == 'conda':
filter['conda'] = dist
found = True
break
for dep in info.get('depends', []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if not quiet and filter:
print('The following packages cannot be cloned out of the root environment:')
for pkg in itervalues(filter):
print(' - ' + pkg)
# Assemble the URL and channel list
urls = {}
index = {}
for dist, info in iteritems(drecs):
if info['name'] in filter:
continue
url = info.get('url')
if url is None:
sys.exit('Error: no URL found for package: %s' % dist)
_, schannel = url_channel(url)
index[dist + '.tar.bz2'] = info
urls[dist] = url
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(urls, prefix2, verbose=not quiet,
force_extract=False, fetch_args=fetch_args)
return actions, untracked_files
def explicit(specs,
prefix,
verbose=False,
force_extract=True,
fetch_args=None):
actions = defaultdict(list)
actions['PREFIX'] = prefix
actions[
'op_order'] = RM_FETCHED, FETCH, RM_EXTRACTED, EXTRACT, UNLINK, LINK
linked = {install.name_dist(dist): dist for dist in install.linked(prefix)}
fetch_args = fetch_args or {}
index = {}
verifies = []
channels = {}
for spec in specs:
if spec == '@EXPLICIT':
continue
# Format: (url|path)(:#md5)?
m = url_pat.match(spec)
if m is None:
sys.exit('Could not parse explicit URL: %s' % spec)
url, md5 = m.group('url') + '/' + m.group('fn'), m.group('md5')
if not is_url(url):
if not isfile(url):
sys.exit('Error: file not found: %s' % url)
url = utils.url_path(url)
url_p, fn = url.rsplit('/', 1)
# See if the URL refers to a package in our cache
prefix = pkg_path = dir_path = None
if url_p.startswith('file://'):
prefix = install.cached_url(url)
# If not, determine the channel name from the URL
if prefix is None:
_, schannel = url_channel(url)
prefix = '' if schannel == 'defaults' else schannel + '::'
fn = prefix + fn
dist = fn[:-8]
pkg_path = install.is_fetched(dist)
dir_path = install.is_extracted(dist)
# Don't re-fetch unless there is an MD5 mismatch
if pkg_path and (md5 and md5_file(pkg_path) != md5):
# This removes any extracted copies as well
actions[RM_FETCHED].append(dist)
pkg_path = dir_path = None
# Don't re-extract unless forced, or if we can't check the md5
if dir_path and (force_extract or md5 and not pkg_path):
actions[RM_EXTRACTED].append(dist)
dir_path = None
if not dir_path:
if not pkg_path:
_, conflict = install.find_new_location(dist)
if conflict:
actions[RM_FETCHED].append(conflict)
channels[url_p + '/'] = (schannel, 0)
actions[FETCH].append(dist)
verifies.append((dist + '.tar.bz2', md5))
actions[EXTRACT].append(dist)
# unlink any installed package with that name
name = install.name_dist(dist)
if name in linked:
actions[UNLINK].append(linked[name])
actions[LINK].append(dist)
# Pull the repodata for channels we are using
if channels:
index.update(fetch_index(channels, **fetch_args))
# Finish the MD5 verification
for fn, md5 in verifies:
info = index.get(fn)
if info is None:
sys.exit("Error: no package '%s' in index" % fn)
if md5 and 'md5' not in info:
sys.stderr.write('Warning: cannot lookup MD5 of: %s' % fn)
if md5 and info['md5'] != md5:
sys.exit('MD5 mismatch for: %s\n spec: %s\n repo: %s' %
(fn, md5, info['md5']))
execute_actions(actions, index=index, verbose=verbose)
return actions
def clone_env(prefix1, prefix2, verbose=True, quiet=False, fetch_args=None):
"""
clone existing prefix1 into new prefix2
"""
untracked_files = untracked(prefix1)
# Discard conda and any package that depends on it
drecs = install.linked_data(prefix1)
filter = {}
found = True
while found:
found = False
for dist, info in iteritems(drecs):
name = info['name']
if name in filter:
continue
if name == 'conda':
filter['conda'] = dist
found = True
break
for dep in info.get('depends', []):
if MatchSpec(dep).name in filter:
filter[name] = dist
found = True
if not quiet and filter:
print(
'The following packages cannot be cloned out of the root environment:'
)
for pkg in itervalues(filter):
print(' - ' + pkg)
# Assemble the URL and channel list
urls = {}
index = {}
for dist, info in iteritems(drecs):
if info['name'] in filter:
continue
url = info.get('url')
if url is None:
sys.exit('Error: no URL found for package: %s' % dist)
_, schannel = url_channel(url)
index[dist + '.tar.bz2'] = info
urls[dist] = url
r = Resolve(index)
dists = r.dependency_sort(urls.keys())
urls = [urls[d] for d in dists]
if verbose:
print('Packages: %d' % len(dists))
print('Files: %d' % len(untracked_files))
for f in untracked_files:
src = join(prefix1, f)
dst = join(prefix2, f)
dst_dir = dirname(dst)
if islink(dst_dir) or isfile(dst_dir):
os.unlink(dst_dir)
if not isdir(dst_dir):
os.makedirs(dst_dir)
if islink(src):
os.symlink(os.readlink(src), dst)
continue
try:
with open(src, 'rb') as fi:
data = fi.read()
except IOError:
continue
try:
s = data.decode('utf-8')
s = s.replace(prefix1, prefix2)
data = s.encode('utf-8')
except UnicodeDecodeError: # data is binary
pass
with open(dst, 'wb') as fo:
fo.write(data)
shutil.copystat(src, dst)
actions = explicit(urls,
prefix2,
verbose=not quiet,
force_extract=False,
fetch_args=fetch_args)
return actions, untracked_files
