def test_missing_r_base():
with pytest.raises(RError) as err:
env = Environment.read(name="test_env_name_that_does_not_exist")
check_r_base_package(env=env)
assert (
str(err.value)
== f'"r-base" not installed.\nFound conda packages:\n[]\nMust have "r-base" conda installed to install R packages.'
)
def r_remove(name: str, specs=ListLike, yes: bool = False) -> Environment:
"""R remove spec"""
env = Environment.read(name=name)
check_r_base_package(env=env)
packages = Packages.from_specs(specs)
RHandler(env=env).remove(packages=packages)
_ask_user_to_sync(name=name, yes=yes)
return env
def r_install(
name: str, package_names: ListLike, commands: ListLike, yes: bool = False
) -> Environment:
"""Install R packages with corresponding R command."""
env = Environment.read(name=name)
check_r_base_package(env=env)
packages = clean_r_specs(package_names=package_names, commands=commands)
RHandler(env=env).install(packages=packages)
_ask_user_to_sync(name=name, yes=yes)
return env