def genetree_worker(params):
"""Worker function to compute genetrees for individual loci"""
locus, fullpth = params
name, phylip = locus
pth, exe = os.path.split(fullpth)
args_dict = {}
phyml = Phyml(phylip, pth=pth, exe=exe)
model, tree = phyml.best_aicc_model_and_tree()
args_dict["chrm"] = name
args_dict["model"] = model
tree = "tree '%s' = [&U] %s" % (make_tree_name(args_dict), tree)
sys.stdout.write("[Info] {0} {1} genetree completed\n".format(strftime("%a, %d %b %Y %H:%M:%S", localtime()), name))
sys.stdout.flush()
return (name, model, tree)
def genetree_worker(params):
"""Worker function to compute genetrees for individual loci"""
locus, fullpth = params
name, phylip = locus
pth, exe = os.path.split(fullpth)
args_dict = {}
phyml = Phyml(phylip, pth=pth, exe=exe)
model, tree = phyml.best_aicc_model_and_tree()
args_dict['chrm'] = name
args_dict['model'] = model
tree = "tree '%s' = [&U] %s" % (make_tree_name(args_dict), tree)
sys.stdout.write("[Info] {0} {1} genetree completed\n".format(
strftime("%a, %d %b %Y %H:%M:%S", localtime()), name))
sys.stdout.flush()
return (name, model, tree)
