def convert_to_onnx_input(sample, input_metadata_list):
sess = local_cache["sess"]
input_dict = {}
if len(input_metadata_list) == 1:
input_metadata = input_metadata_list[0]
if util.is_dict(sample):
if sample.get(input_metadata.name) is None:
raise ValueError("sample should be a dict containing key: " +
input_metadata.name)
input_dict[input_metadata.name] = transform_to_numpy(
sample[input_metadata.name], input_metadata)
else:
input_dict[input_metadata.name] = transform_to_numpy(
sample, input_metadata)
else:
for input_metadata in input_metadata_list:
if not sample.is_dict(input_metadata):
expected_keys = [
metadata.name for metadata in input_metadata_list
]
raise ValueError("sample should be a dict containing keys: " +
", ".join(expected_keys))
if sample.get(input_metadata.name) is None:
raise ValueError("sample should be a dict containing key: " +
input_metadata.name)
input_dict[input_metadata.name] = transform_to_numpy(
sample, input_metadata)
return input_dict
def convert_to_onnx_input(model_input, input_metadata_list, model_name):
input_dict = {}
if len(input_metadata_list) == 1:
input_metadata = input_metadata_list[0]
if util.is_dict(model_input):
if model_input.get(input_metadata.name) is None:
raise UserException("missing key '{}' for model '{}'".format(
input_metadata.name, model_name))
input_dict[input_metadata.name] = transform_to_numpy(
model_input[input_metadata.name], input_metadata, model_name)
else:
try:
input_dict[input_metadata.name] = transform_to_numpy(
model_input, input_metadata, model_name)
except CortexException as e:
e.wrap("key '{}' for model '{}'".format(
input_metadata.name, model_name))
raise
else:
for input_metadata in input_metadata_list:
if not util.is_dict(model_input):
expected_keys = [
metadata.name for metadata in input_metadata_list
]
raise UserException(
"expected model_input to be a dictionary with keys '{}' for model '{}'"
.format(
", ".join('"' + key + '"' for key in expected_keys),
model_name))
if model_input.get(input_metadata.name) is None:
raise UserException("missing key '{}' for model '{}'".format(
input_metadata.name, model_name))
try:
input_dict[input_metadata.name] = transform_to_numpy(
model_input[input_metadata.name], input_metadata,
model_name)
except CortexException as e:
e.wrap("key '{}' for model '{}'".format(
input_metadata.name, model_name))
raise
return input_dict
def convert_to_onnx_input(payload, input_metadata_list):
input_dict = {}
if len(input_metadata_list) == 1:
input_metadata = input_metadata_list[0]
if util.is_dict(payload):
if payload.get(input_metadata.name) is None:
raise UserException('missing key "{}"'.format(
input_metadata.name))
input_dict[input_metadata.name] = transform_to_numpy(
payload[input_metadata.name], input_metadata)
else:
try:
input_dict[input_metadata.name] = transform_to_numpy(
payload, input_metadata)
except CortexException as e:
e.wrap('key "{}"'.format(input_metadata.name))
raise
else:
for input_metadata in input_metadata_list:
if not util.is_dict(payload):
expected_keys = [
metadata.name for metadata in input_metadata_list
]
raise UserException(
"expected payload to be a dictionary with keys {}".format(
", ".join('"' + key + '"' for key in expected_keys)))
if payload.get(input_metadata.name) is None:
raise UserException('missing key "{}"'.format(
input_metadata.name))
try:
input_dict[input_metadata.name] = transform_to_numpy(
payload[input_metadata.name], input_metadata)
except CortexException as e:
e.wrap('key "{}"'.format(input_metadata.name))
raise
return input_dict
def predict(deployment_name, api_name):
try:
payload = request.get_json()
except Exception as e:
return "Malformed JSON", status.HTTP_400_BAD_REQUEST
ctx = local_cache["ctx"]
api = local_cache["api"]
response = {}
if not util.is_dict(payload) or "samples" not in payload:
util.log_pretty_flat(payload, logging_func=logger.error)
return prediction_failed(
payload, "top level `samples` key not found in request")
predictions = []
samples = payload["samples"]
if not util.is_list(samples):
util.log_pretty_flat(samples, logging_func=logger.error)
return prediction_failed(
payload,
"expected the value of key `samples` to be a list of json objects")
for i, sample in enumerate(payload["samples"]):
try:
result = run_predict(sample)
except CortexException as e:
e.wrap("error", "sample {}".format(i + 1))
logger.error(str(e))
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details."
.format(api["name"]))
return prediction_failed(sample, str(e))
except Exception as e:
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details."
.format(api["name"]))
return prediction_failed(sample, str(e))
predictions.append(result)
response["predictions"] = predictions
response["resource_id"] = api["id"]
return jsonify(response)
def create_transformer_inputs_from_map(input, col_value_map):
if util.is_str(input):
if util.is_resource_ref(input):
res_name = util.get_resource_ref(input)
return col_value_map[res_name]
return input
if util.is_list(input):
replaced = []
for item in input:
replaced.append(create_transformer_inputs_from_map(item, col_value_map))
return replaced
if util.is_dict(input):
replaced = {}
for key, val in input.items():
key_replaced = create_transformer_inputs_from_map(key, col_value_map)
val_replaced = create_transformer_inputs_from_map(val, col_value_map)
replaced[key_replaced] = val_replaced
return replaced
return input
def start(args):
ctx = Context(s3_path=args.context,
cache_dir=args.cache_dir,
workload_id=args.workload_id)
api = ctx.apis_id_map[args.api]
local_cache["api"] = api
local_cache["ctx"] = ctx
try:
if api.get("request_handler_impl_key") is not None:
local_cache["request_handler"] = ctx.get_request_handler_impl(
api["name"])
if not util.is_resource_ref(api["model"]):
if api.get("request_handler") is not None:
package.install_packages(ctx.python_packages, ctx.storage)
if not os.path.isdir(args.model_dir):
ctx.storage.download_and_unzip_external(
api["model"], args.model_dir)
else:
package.install_packages(ctx.python_packages, ctx.storage)
model_name = util.get_resource_ref(api["model"])
model = ctx.models[model_name]
estimator = ctx.estimators[model["estimator"]]
local_cache["model"] = model
local_cache["estimator"] = estimator
local_cache["target_col"] = ctx.columns[util.get_resource_ref(
model["target_column"])]
local_cache["target_col_type"] = ctx.get_inferred_column_type(
util.get_resource_ref(model["target_column"]))
log_level = "DEBUG"
if ctx.environment is not None and ctx.environment.get(
"log_level") is not None:
log_level = ctx.environment["log_level"].get(
"tensorflow", "DEBUG")
tf_lib.set_logging_verbosity(log_level)
if not os.path.isdir(args.model_dir):
ctx.storage.download_and_unzip(model["key"], args.model_dir)
for column_name in ctx.extract_column_names(
[model["input"], model["target_column"]]):
if ctx.is_transformed_column(column_name):
trans_impl, _ = ctx.get_transformer_impl(column_name)
local_cache["trans_impls"][column_name] = trans_impl
transformed_column = ctx.transformed_columns[column_name]
# cache aggregate values
for resource_name in util.extract_resource_refs(
transformed_column["input"]):
if resource_name in ctx.aggregates:
ctx.get_obj(ctx.aggregates[resource_name]["key"])
local_cache["required_inputs"] = tf_lib.get_base_input_columns(
model["name"], ctx)
if util.is_dict(model["input"]) and model["input"].get(
"target_vocab") is not None:
local_cache["target_vocab_populated"] = ctx.populate_values(
model["input"]["target_vocab"], None, False)
except CortexException as e:
e.wrap("error")
logger.error(str(e))
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details.".
format(api["name"]))
sys.exit(1)
except Exception as e:
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details.".
format(api["name"]))
sys.exit(1)
try:
validate_model_dir(args.model_dir)
except Exception as e:
logger.exception(e)
sys.exit(1)
channel = grpc.insecure_channel("localhost:" + str(args.tf_serve_port))
local_cache["stub"] = prediction_service_pb2_grpc.PredictionServiceStub(
channel)
# wait a bit for tf serving to start before querying metadata
limit = 300
for i in range(limit):
try:
local_cache["metadata"] = run_get_model_metadata()
break
except Exception as e:
if i == limit - 1:
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details."
.format(api["name"]))
sys.exit(1)
time.sleep(1)
serve(app, listen="*:{}".format(args.port))
def populate_values(self, input, input_schema, preserve_column_refs):
if input is None:
if input_schema is None:
return None
if input_schema.get("_allow_null") == True:
return None
raise UserException("Null value is not allowed")
if util.is_resource_ref(input):
res_name = util.get_resource_ref(input)
if res_name in self.constants:
if self.constants[res_name].get("value") is not None:
const_val = self.constants[res_name]["value"]
elif self.constants[res_name].get("path") is not None:
const_val = self.storage.get_json_external(self.constants[res_name]["path"])
try:
return self.populate_values(const_val, input_schema, preserve_column_refs)
except CortexException as e:
e.wrap("constant " + res_name)
raise
if res_name in self.aggregates:
agg_val = self.get_obj(self.aggregates[res_name]["key"])
try:
return self.populate_values(agg_val, input_schema, preserve_column_refs)
except CortexException as e:
e.wrap("aggregate " + res_name)
raise
if res_name in self.columns:
if input_schema is not None:
col_type = self.get_inferred_column_type(res_name)
if col_type not in input_schema["_type"]:
raise UserException(
"column {}: unsupported input type (expected type {}, got type {})".format(
res_name,
util.data_type_str(input_schema["_type"]),
util.data_type_str(col_type),
)
)
if preserve_column_refs:
return input
else:
return res_name
if util.is_list(input):
elem_schema = None
if input_schema is not None:
if not util.is_list(input_schema["_type"]):
raise UserException(
"unsupported input type (expected type {}, got {})".format(
util.data_type_str(input_schema["_type"]), util.user_obj_str(input)
)
)
elem_schema = input_schema["_type"][0]
min_count = input_schema.get("_min_count")
if min_count is not None and len(input) < min_count:
raise UserException(
"list has length {}, but the minimum allowed length is {}".format(
len(input), min_count
)
)
max_count = input_schema.get("_max_count")
if max_count is not None and len(input) > max_count:
raise UserException(
"list has length {}, but the maximum allowed length is {}".format(
len(input), max_count
)
)
casted = []
for i, elem in enumerate(input):
try:
casted.append(self.populate_values(elem, elem_schema, preserve_column_refs))
except CortexException as e:
e.wrap("index " + i)
raise
return casted
if util.is_dict(input):
if input_schema is None:
casted = {}
for key, val in input.items():
key_casted = self.populate_values(key, None, preserve_column_refs)
try:
val_casted = self.populate_values(val, None, preserve_column_refs)
except CortexException as e:
e.wrap(util.user_obj_str(key))
raise
casted[key_casted] = val_casted
return casted
if not util.is_dict(input_schema["_type"]):
raise UserException(
"unsupported input type (expected type {}, got {})".format(
util.data_type_str(input_schema["_type"]), util.user_obj_str(input)
)
)
min_count = input_schema.get("_min_count")
if min_count is not None and len(input) < min_count:
raise UserException(
"map has length {}, but the minimum allowed length is {}".format(
len(input), min_count
)
)
max_count = input_schema.get("_max_count")
if max_count is not None and len(input) > max_count:
raise UserException(
"map has length {}, but the maximum allowed length is {}".format(
len(input), max_count
)
)
is_generic_map = False
if len(input_schema["_type"]) == 1:
input_type_key = next(iter(input_schema["_type"].keys()))
if is_compound_type(input_type_key):
is_generic_map = True
generic_map_key_schema = input_schema_from_type_schema(input_type_key)
generic_map_value = input_schema["_type"][input_type_key]
if is_generic_map:
casted = {}
for key, val in input.items():
key_casted = self.populate_values(
key, generic_map_key_schema, preserve_column_refs
)
try:
val_casted = self.populate_values(
val, generic_map_value, preserve_column_refs
)
except CortexException as e:
e.wrap(util.user_obj_str(key))
raise
casted[key_casted] = val_casted
return casted
# fixed map
casted = {}
for key, val_schema in input_schema["_type"].items():
if key in input:
val = input[key]
else:
if val_schema.get("_optional") is not True:
raise UserException("missing key: " + util.user_obj_str(key))
if val_schema.get("_default") is None:
continue
val = val_schema["_default"]
try:
val_casted = self.populate_values(val, val_schema, preserve_column_refs)
except CortexException as e:
e.wrap(util.user_obj_str(key))
raise
casted[key] = val_casted
return casted
if input_schema is None:
return input
if not util.is_str(input_schema["_type"]):
raise UserException(
"unsupported input type (expected type {}, got {})".format(
util.data_type_str(input_schema["_type"]), util.user_obj_str(input)
)
)
return cast_compound_type(input, input_schema["_type"])
def predict(app_name, api_name):
try:
payload = request.get_json()
except Exception as e:
return "Malformed JSON", status.HTTP_400_BAD_REQUEST
sess = local_cache["sess"]
api = local_cache["api"]
request_handler = local_cache.get("request_handler")
input_metadata = local_cache["input_metadata"]
output_metadata = local_cache["output_metadata"]
response = {}
if not util.is_dict(payload) or "samples" not in payload:
util.log_pretty_flat(payload, logging_func=logger.error)
return prediction_failed(
payload, "top level `samples` key not found in request")
predictions = []
samples = payload["samples"]
if not util.is_list(samples):
util.log_pretty_flat(samples, logging_func=logger.error)
return prediction_failed(
payload,
"expected the value of key `samples` to be a list of json objects")
for i, sample in enumerate(payload["samples"]):
try:
logger.info("sample: " + util.pp_str_flat(sample))
prepared_sample = sample
if request_handler is not None and util.has_function(
request_handler, "pre_inference"):
prepared_sample = request_handler.pre_inference(
sample, input_metadata)
logger.info("pre_inference: " +
util.pp_str_flat(prepared_sample))
inference_input = convert_to_onnx_input(prepared_sample,
input_metadata)
model_outputs = sess.run([], inference_input)
result = []
for model_output in model_outputs:
if type(model_output) is np.ndarray:
result.append(model_output.tolist())
else:
result.append(model_output)
logger.info("inference: " + util.pp_str_flat(result))
if request_handler is not None and util.has_function(
request_handler, "post_inference"):
result = request_handler.post_inference(
result, output_metadata)
logger.info("post_inference: " + util.pp_str_flat(result))
prediction = {"prediction": result}
except CortexException as e:
e.wrap("error", "sample {}".format(i + 1))
logger.error(str(e))
logger.exception(
"An error occurred, see `cx logs -v api {}` for more details.".
format(api["name"]))
return prediction_failed(sample, str(e))
except Exception as e:
logger.exception(
"An error occurred, see `cx logs -v api {}` for more details.".
format(api["name"]))
return prediction_failed(sample, str(e))
predictions.append(prediction)
response["predictions"] = predictions
response["resource_id"] = api["id"]
return jsonify(response)
def predict(deployment_name, api_name):
try:
payload = request.get_json()
except Exception as e:
return "Malformed JSON", status.HTTP_400_BAD_REQUEST
ctx = local_cache["ctx"]
api = local_cache["api"]
response = {}
if not util.is_dict(payload) or "samples" not in payload:
util.log_pretty_flat(payload, logging_func=logger.error)
return prediction_failed(
payload, "top level `samples` key not found in request")
logger.info("Predicting " +
util.pluralize(len(payload["samples"]), "sample", "samples"))
predictions = []
samples = payload["samples"]
if not util.is_list(samples):
util.log_pretty_flat(samples, logging_func=logger.error)
return prediction_failed(
payload,
"expected the value of key `samples` to be a list of json objects")
for i, sample in enumerate(payload["samples"]):
util.log_indent("sample {}".format(i + 1), 2)
if util.is_resource_ref(api["model"]):
is_valid, reason = is_valid_sample(sample)
if not is_valid:
return prediction_failed(sample, reason)
for column in local_cache["required_inputs"]:
column_type = ctx.get_inferred_column_type(column["name"])
sample[column["name"]] = util.upcast(sample[column["name"]],
column_type)
try:
result = run_predict(sample)
except CortexException as e:
e.wrap("error", "sample {}".format(i + 1))
logger.error(str(e))
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details."
.format(api["name"]))
return prediction_failed(sample, str(e))
except Exception as e:
logger.exception(
"An error occurred, see `cortex logs -v api {}` for more details."
.format(api["name"]))
# Show signature def for external models (since we don't validate input)
schemaStr = ""
signature_def = local_cache["metadata"]["signatureDef"]
if (not util.is_resource_ref(api["model"]) and
signature_def.get("predict") is not None # Just to be safe
and signature_def["predict"].get("inputs") is
not None # Just to be safe
):
schemaStr = "\n\nExpected shema:\n" + util.pp_str(
signature_def["predict"]["inputs"])
return prediction_failed(sample, str(e) + schemaStr)
predictions.append(result)
response["predictions"] = predictions
response["resource_id"] = api["id"]
return jsonify(response)
