Esempi in Python per Options

Esempio n. 1

File: demo_scorer.py Progetto: CountESS-Project/CountESS

from countess.plugins.scoring import BaseScorerPlugin
from countess.plugins.options import Options


# Options that will be rendered to the GUI for easy access
options = Options()
options.add_option(
    name="Normalization Method",
    varname="logr_method",
    dtype=str,
    default="Wild Type",
    choices={"Wild Type": "wt", "Full": "full", "Complete": "complete"},
    hidden=False,
)
options.add_option(
    name="Weighted",
    varname="weighted",
    dtype=bool,
    default=True,
    choices={},
    hidden=False,
)
options.add_option(
    name="Example String Input",
    varname="ex_string",
    dtype=str,
    default="Default String...",
    choices={},
    hidden=False,
)
options.add_option(

Esempio n. 2

File: ratios_scorer.py Progetto: CountESS-Project/CountESS

import logging
import numpy as np
import pandas as pd

from countess.plugins.scoring import BaseScorerPlugin
from countess.plugins.options import Options
from countess.base.constants import WILD_TYPE_VARIANT
from countess.base.utils import log_message
from countess.base.constants import IDENTIFIERS, VARIANTS

options = Options()
options.add_option(
    name="Normalization Method",
    varname="logr_method",
    dtype=str,
    default="Wild Type",
    choices={
        "Wild Type": "wt",
        "Full": "full",
        "Complete": "complete"
    },
    hidden=False,
)


class RatiosScorer(BaseScorerPlugin):

    name = "Ratios"
    version = "1.0"
    author = "Alan Rubin, Daniel Esposito"

Esempio n. 3

import logging
import numpy as np
import pandas as pd
import statsmodels.api as sm
import scipy.stats as stats

from countess.plugins.scoring import BaseScorerPlugin
from countess.plugins.options import Options
from countess.base.constants import WILD_TYPE_VARIANT
from countess.base.constants import VARIANTS, IDENTIFIERS

from countess.base.utils import log_message

options = Options()
options.add_option(
    name="Normalization Method",
    varname="logr_method",
    dtype=str,
    default="Wild Type",
    choices={"Wild Type": "wt", "Complete Cases": "complete", "All Reads": "full"},
    hidden=False,
)
options.add_option(
    name="Weighted",
    varname="weighted",
    dtype=bool,
    default=True,
    choices={},
    hidden=False,
)

Esempio n. 4

File: two_options.py Progetto: CountESS-Project/CountESS

from countess.plugins.scoring import BaseScorerPlugin
from countess.plugins.options import Options

options_1 = Options()
options_2 = Options()


class CountsScorer(BaseScorerPlugin):

    name = "Counts Only"
    version = "1.0"
    author = "Alan Rubin, Daniel Esposito"

    def __init__(self, store_manager, options):
        super().__init__(store_manager, options)

    def compute_scores(self):
        return

    def row_apply_function(self, *args, **kwargs):
        return

Esempio n. 5

File: empty_options.py Progetto: CountESS-Project/CountESS

from countess.plugins.scoring import BaseScorerPlugin
from countess.plugins.options import Options

options_1 = Options()


class CountsScorer(BaseScorerPlugin):

    name = "Counts Only"
    version = "1.0"
    author = "Alan Rubin, Daniel Esposito"

    def __init__(self, store_manager, options):
        super().__init__(store_manager, options)

    def compute_scores(self):
        return

    def row_apply_function(self, *args, **kwargs):
        return