Esempio n. 1
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def test_set_state_for_file_when_file_in_black_list(config, blacklist_for_centre, testing_centres):
    centre = Centre(config, config.CENTRES[0])
    centre_file = CentreFile("AP_sanger_report_200503_2338.csv", centre)
    centre_file.set_state_for_file()

    assert centre_file.file_state == CentreFileState.FILE_IN_BLACKLIST
Esempio n. 2
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def test_is_valid_date_format(centre_file: CentreFile) -> None:
    assert centre_file.is_valid_date_format({}, 1,
                                            FIELD_DATE_TESTED) == (True, {})

    date_time = datetime(year=2020,
                         month=11,
                         day=22,
                         hour=4,
                         minute=36,
                         second=38,
                         tzinfo=timezone.utc)

    # "Normal" datetime, seen most of the time, with timezone
    row: ModifiedRow = {
        FIELD_DATE_TESTED: date_time.strftime("%Y-%m-%d %H:%M:%S %Z")
    }
    assert centre_file.is_valid_date_format(row, 1, FIELD_DATE_TESTED) == (
        True,
        {
            "year": f"{date_time.year:02}",
            "month": f"{date_time.month:02}",
            "day": f"{date_time.day:02}",
            "time": date_time.strftime("%H:%M:%S"),
            "timezone_name": date_time.tzname(),
        },
    )

    # "Normal" datetime, seen most of the time, without timezone
    row = {FIELD_DATE_TESTED: date_time.strftime("%Y-%m-%d %H:%M:%S")}
    assert centre_file.is_valid_date_format(row, 1, FIELD_DATE_TESTED) == (
        True,
        {
            "year": f"{date_time.year:02}",
            "month": f"{date_time.month:02}",
            "day": f"{date_time.day:02}",
            "time": date_time.strftime("%H:%M:%S"),
            "timezone_name": None,
        },
    )

    # other format
    row = {FIELD_DATE_TESTED: date_time.strftime("%d/%m/%Y %H:%M")}
    assert centre_file.is_valid_date_format(row, 1, FIELD_DATE_TESTED) == (
        True,
        {
            "year": f"{date_time.year:02}",
            "month": f"{date_time.month:02}",
            "day": f"{date_time.day:02}",
            "time": date_time.strftime("%H:%M"),
        },
    )

    # wrong format
    row = {FIELD_DATE_TESTED: date_time.strftime("%d %m %Y %H:%M")}
    assert centre_file.is_valid_date_format(row, 1,
                                            FIELD_DATE_TESTED) == (False, {})

    # empty date
    row = {FIELD_DATE_TESTED: ""}
    assert centre_file.is_valid_date_format(row, 1,
                                            FIELD_DATE_TESTED) == (True, {})
Esempio n. 3
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def test_set_state_for_file_when_never_seen_before(config, testing_centres):
    centre = Centre(config, config.CENTRES[0])
    centre_file = CentreFile("AP_sanger_report_200503_2338.csv", centre)
    centre_file.set_state_for_file()

    assert centre_file.file_state == CentreFileState.FILE_NOT_PROCESSED_YET
Esempio n. 4
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def centre_file(centre):
    yield CentreFile("some_file.csv", centre)