def download_data_set(request, data_set_id, what, file_ext):
us = get_session(request)
data_sets = DataSet.get_common_data_sets() if us is None else us.get_all_allowed_dataset_set()
if what == 'reference':
data_set_id, file_ext = DataSet.split_seq_ext(data_set_id + file_ext)
try:
ds = data_sets.get(dirname=data_set_id)
except DataSet.DoesNotExist:
return HttpResponseNotFound('Data set %s was not found' % data_set_id)
if what == 'reference':
fpath = os.path.join(ds.get_dirpath(), ds.reference_fname)
if DataSet.split_seq_ext(fpath)[1] != file_ext:
return HttpResponseNotFound()
return __download(fpath, data_set_id + file_ext)
else:
if what == 'genes':
fpath = os.path.join(ds.get_dirpath(), ds.genes_fname)
elif what == 'operons':
fpath = os.path.join(ds.get_dirpath(), ds.operons_fname)
else:
return HttpResponseNotFound()
if DataSet.split_genes_ext(fpath)[1] != file_ext:
return HttpResponseNotFound()
return __download(fpath, data_set_id + '_' + what + file_ext)
def reorder_report_columns_ajax(request):
user_session = get_session(request)
if user_session is None:
return HttpResponseNotFound('No user session for this session_key')
try:
report_id = request.GET['reportId']
except KeyError:
return HttpResponseNotFound('Value of reportId needed')
try:
order = map(int, request.GET['order'].split()) # 3 1 4 2
except KeyError:
return HttpResponseNotFound('Order was not provided')
except ValueError:
return HttpResponseNotFound('Incorrect order: should be space-separated numbers, like "3 1 5 3""')
try:
qs = QuastSession.objects.get(report_id=report_id)
except QuastSession.DoesNotExist:
return HttpResponseNotFound('Report %s not found' % report_id)
with open(os.path.join(qs.get_dirpath(), 'report.json')) as report_f:
report = json.loads(report_f.read())
report['order'] = order
# for group in report['report']:
# for metric in group[1]:
# values_by_asm_names = dict(zip(report['assembliesNames'], metric['values']))
# metric['values'] = [values_by_asm_names[name] for name in new_assembly_names] # new order
# report['assembliesNames'] = new_assembly_names
with open(os.path.join(qs.get_dirpath(), 'report.json'), 'w') as report_f:
report_f.write(json.dumps(report))
return HttpResponse()
def icarus_contig_size_viewer(request, link):
user_session = get_session(request)
return icarus_view(user_session, dict(settings.TEMPLATE_ARGS_BY_DEFAULT), request, link, is_contig_size_plot=True)
def icarus_alignment_viewer(request, link):
user_session = get_session(request)
return icarus_view(user_session, dict(settings.TEMPLATE_ARGS_BY_DEFAULT), request, link)
def icarus(request, link):
user_session = get_session(request)
return icarus_view(user_session, dict(settings.TEMPLATE_ARGS_BY_DEFAULT), request, link, is_menu=True)
def report(request, link):
user_session = get_session(request)
return report_view(user_session, dict(settings.TEMPLATE_ARGS_BY_DEFAULT), request, link)
