def convert_instance(in_node, out_node, form_name=None):
xmlns, name = util.split_tag(in_node.tag)
if list(in_node):
if form_name:
group = et.SubElement(out_node, _('FormData'))
group.attrib['FormOID'] = form_name
else:
group = et.SubElement(out_node, _('ItemGroupData'))
group.attrib['ItemGroupOID'] = name
group.attrib['ItemGroupRepeatKey'] = str(1)
group.attrib['TransactionType'] = 'Insert'
for child in in_node:
convert_instance(child, group)
else:
value = (in_node.text or '')
# hack to fix time answers
m = re.match(r'(\d{1,2}):(\d{2}):\d{2}', value)
if m:
value = '%02d%02d' % (int(m.group(1)), int(m.group(2)))
ALLOW_FORCE_COMPLETION = True # if we allow form to be submitted in incomplete state -- required questions might be blank
is_required = True # TODO figure out how to pull this from the crf definition; i think currently everything is required so doesn't matter
if ALLOW_FORCE_COMPLETION and is_required and value == '':
# strip this answer from the submission or OC will complain about data integrity
return
q = et.SubElement(out_node, _('ItemData'))
q.attrib['ItemOID'] = name
q.attrib['Value'] = value
def odm_scaffold(metadata, resp):
odm = et.Element(_('ODM'))
clindata = et.SubElement(odm, _('ClinicalData'))
clindata.attrib['StudyOID'] = metadata['study']
clindata.attrib['MetaDataVersionOID'] = metadata['mdv']
subjdata = et.SubElement(clindata, _('SubjectData'))
subjdata.attrib['SubjectKey'] = resp['subject_id']
seevtdata = et.SubElement(subjdata, _('StudyEventData'))
seevtdata.attrib['StudyEventOID'] = metadata['studyevent']
if resp['event_ordinal']:
seevtdata.attrib['StudyEventRepeatKey'] = str(resp['event_ordinal'])
return odm, seevtdata
def convert_odm(context, f, source):
doc = et.parse(f)
if source:
ref_instance = list(source.find('.//%s' % _('instance', 'xf')))[0]
else:
ref_instance = None
return build_submission(context, doc.getroot(), ref_instance)