def test_get_gaps_multiple(self):
"""Test get_gaps(), multiple chain"""
gaps = cleaning.get_gaps(os.path.join(TOPDIR, 'test', 'input',
'test-multi.ali'))
self.assertEqual(gaps, ['3:A,4:A', '10:B,12:B'])
def test_get_gaps_multiple(self):
"""Test get_gaps(), multiple chain"""
gaps = cleaning.get_gaps(
os.path.join(TOPDIR, 'test', 'input', 'test-multi.ali'))
self.assertEqual(gaps, ['3:A,4:A', '10:B,12:B'])
def test_get_gaps_single(self):
"""Test get_gaps(), single chain"""
gaps = cleaning.get_gaps(os.path.join(TOPDIR, 'test', 'input',
'test.ali'))
self.assertEqual(gaps, ['3:,4:', '10:,12:'])
def test_get_gaps_single(self):
"""Test get_gaps(), single chain"""
gaps = cleaning.get_gaps(
os.path.join(TOPDIR, 'test', 'input', 'test.ali'))
self.assertEqual(gaps, ['3:,4:', '10:,12:'])