def __init__(self,
cset,
weights=None,
delays=None,
safe=True,
verbose=False):
"""
"""
min_delay = common.get_min_delay()
Connector.__init__(self, None, None, safe=safe, verbose=verbose)
self.cset = cset
if csa.arity(cset) == 0:
#assert weights is not None and delays is not None, \
# 'must specify weights and delays in addition to a CSA mask'
self.weights = weights
if weights is None:
self.weights = common.DEFAULT_WEIGHT
self.delays = delays
if delays is None:
self.delays = common.get_min_delay()
else:
assert csa.arity(
cset
) == 2, 'must specify mask or connection-set with arity 2'
assert weights is None and delays is None, \
"weights or delays specified both in connection-set and as CSAConnector argument"
def __init__(self, cset, safe=True, callback=None):
"""
"""
Connector.__init__(self, safe=safe, callback=callback)
self.cset = cset
if csa.arity(cset) == 0:
pass
else:
assert csa.arity(cset) == 2, 'must specify mask or connection-set with arity 2'
def __init__(self, cset, safe=True, callback=None):
"""
"""
Connector.__init__(self, safe=safe, callback=callback)
self.cset = cset
if csa.arity(cset) == 0:
pass
else:
assert csa.arity(cset) == 2, 'must specify mask or connection-set with arity 2'
def __init__(self, cset, safe=True, callback=None):
"""
"""
Connector.__init__(self, safe=safe, callback=callback)
self.cset = cset
arity = csa.arity(cset)
assert arity in (0, 2), 'must specify mask or connection-set with arity 0 or 2'
def __init__(self, cset, safe=True, callback=None):
"""
"""
Connector.__init__(self, safe=safe, callback=callback)
self.cset = cset
arity = csa.arity(cset)
assert arity in (0, 2), 'must specify mask or connection-set with arity 0 or 2'
def connect(self, projection):
"""Connect-up a Projection."""
# Cut out finite part
c = csa.cross((0, projection.pre.size - 1),
(0, projection.post.size - 1)) * self.cset
if csa.arity(self.cset) == 2:
# Connection-set with arity 2
for (i, j, weight, delay) in c:
projection.connection_manager.connect(projection.pre[i],
[projection.post[j]],
weight, delay)
elif CSAConnector.isConstant (self.weights) \
and CSAConnector.isConstant (self.delays):
# Mask with constant weights and delays
for (i, j) in c:
projection.connection_manager.connect(projection.pre[i],
[projection.post[j]],
self.weights,
self.delays)
else:
# Mask with weights and/or delays iterable
weights = self.weights
if CSAConnector.isConstant(weights):
weights = CSAConnector.constantIterator(weights)
delays = self.delays
if CSAConnector.isConstant(delays):
delays = CSAConnector.constantIterator(delays)
for (i, j), weight, delay in zip(c, weights, delays):
projection.connection_manager.connect(projection.pre[i],
[projection.post[j]],
weight, delay)
def connect(self, projection):
"""Connect-up a Projection."""
if self.delays is None:
self.delays = projection._simulator.state.min_delay
# Cut out finite part
c = csa.cross(
(0, projection.pre.size - 1),
(0, projection.post.size -
1)) * self.cset # can't we cut out just the columns we want?
if csa.arity(self.cset) == 2:
# Connection-set with arity 2
for (i, j, weight, delay) in c:
projection._convergent_connect([projection.pre[i]],
projection.post[j], weight,
delay)
elif CSAConnector.isConstant (self.weights) \
and CSAConnector.isConstant (self.delays):
# Mask with constant weights and delays
for (i, j) in c:
projection._convergent_connect([projection.pre[i]],
projection.post[j],
self.weights, self.delays)
else:
# Mask with weights and/or delays iterable
weights = self.weights
if CSAConnector.isConstant(weights):
weights = repeat(weights)
delays = self.delays
if CSAConnector.isConstant(delays):
delays = repeat(delays)
for (i, j), weight, delay in zip(c, weights, delays):
projection._convergent_connect([projection.pre[i]],
projection.post[j], weight,
delay)
def connect(self, projection):
"""Connect-up a Projection."""
if self.delays is None:
self.delays = projection._simulator.state.min_delay
# Cut out finite part
c = csa.cross((0, projection.pre.size-1), (0, projection.post.size-1)) * self.cset # can't we cut out just the columns we want?
if csa.arity(self.cset) == 2:
# Connection-set with arity 2
for (i, j, weight, delay) in c:
projection._convergent_connect([projection.pre[i]], projection.post[j], weight, delay)
elif CSAConnector.isConstant (self.weights) \
and CSAConnector.isConstant (self.delays):
# Mask with constant weights and delays
for (i, j) in c:
projection._convergent_connect([projection.pre[i]], projection.post[j], self.weights, self.delays)
else:
# Mask with weights and/or delays iterable
weights = self.weights
if CSAConnector.isConstant(weights):
weights = repeat(weights)
delays = self.delays
if CSAConnector.isConstant(delays):
delays = repeat(delays)
for (i, j), weight, delay in zip (c, weights, delays):
projection._convergent_connect([projection.pre[i]], projection.post[j], weight, delay)
def __init__ (self, cset, weights=None, delays=None, safe=True, verbose=False):
"""
"""
Connector.__init__(self, None, None, safe=safe, verbose=verbose)
self.cset = cset
if csa.arity(cset) == 0:
#assert weights is not None and delays is not None, \
# 'must specify weights and delays in addition to a CSA mask'
self.weights = weights
if weights is None:
self.weights = DEFAULT_WEIGHT
self.delays = delays
else:
assert csa.arity(cset) == 2, 'must specify mask or connection-set with arity 2'
assert weights is None and delays is None, \
"weights or delays specified both in connection-set and as CSAConnector argument"
def connect(self, projection):
"""Connect-up a Projection."""
# Cut out finite part
c = csa.cross((0, projection.pre.size - 1), (0, projection.post.size - 1)) * self.cset # can't we cut out just the columns we want?
if csa.arity(self.cset) == 2:
# Connection-set with arity 2
for (i, j, weight, delay) in c:
projection._convergent_connect([projection.pre[i]], projection.post[j], weight, delay)
elif csa.arity(self.cset) == 0:
# inefficient implementation as a starting point
connection_map = numpy.zeros((projection.pre.size, projection.post.size), dtype=bool)
for addr in c:
connection_map[addr] = True
self._connect_with_map(projection, LazyArray(connection_map))
else:
raise NotImplementedError
def connect(self, projection):
"""Connect-up a Projection."""
# Cut out finite part
c = csa.cross((0, projection.pre.size - 1), (0, projection.post.size - 1)) * self.cset # can't we cut out just the columns we want?
if csa.arity(self.cset) == 2:
# Connection-set with arity 2
for (i, j, weight, delay) in c:
projection._convergent_connect([projection.pre[i]], projection.post[j], weight, delay)
elif csa.arity(self.cset) == 0:
# inefficient implementation as a starting point
connection_map = numpy.zeros((projection.pre.size, projection.post.size), dtype=bool)
for addr in c:
connection_map[addr] = True
self._connect_with_map(projection, LazyArray(connection_map))
else:
raise NotImplementedError
def connect(self, projection):
"""Connect-up a Projection."""
if self.delays is None:
self.delays = projection._simulator.state.min_delay
def connect_csa(cset, pre, post, syn_type):
print "connecting using cset"
if isinstance(pre, Population) and isinstance(post, Population):
# contiguous IDs, so just pass first_id and size
nest.sli_func("Connect_cg_i_i_i_i_D_l",
self.cset,
pre.first_id, pre.size,
post.first_id, post.size,
{'weight': 0, 'delay': 1}, # ignored if arity==0
syn_type)
else: # PopulationViews or Assemblies
# IDs may be non-contiguous, so need to pass entire arrays
nest.sli_func("Connect_cg_a_a_D_l",
self.cset,
pre.all_cells,
post.all_cells,
{'weight': 0, 'delay': 1}, # ignored if arity==0
syn_type)
# TODO: fix weights units
if csa.arity(self.cset) == 2:
# Connection-set with arity 2
connect_csa(self.cset, projection.pre,
projection.post, projection.synapse_model)
elif CSAConnector.isConstant(self.weights) \
and CSAConnector.isConstant(self.delays):
# Mask with constant weights and delays
assert csa.arity(self.cset) == 0
nest.SetDefaults(projection.synapse_model, {'weight': self.weights, 'delay': self.delays})
connect_csa(self.cset, projection.pre,
projection.post, projection.synapse_model)
projection._sources = projection.pre.all_cells
def connect(self, projection):
"""Connect-up a Projection."""
presynaptic_cells = projection.pre.all_cells.astype('int64')
postsynaptic_cells = projection.post.all_cells.astype('int64')
if csa.arity(self.cset) == 2:
param_map = {'weight': 0, 'delay': 1}
nest.CGConnect(presynaptic_cells, postsynaptic_cells, self.cset,
param_map, projection.nest_synapse_model)
else:
nest.CGConnect(presynaptic_cells, postsynaptic_cells, self.cset,
model=projection.nest_synapse_model)
projection._connections = None # reset the caching of the connection list, since this will have to be recalculated
projection._sources.extend(presynaptic_cells)
def connect(self, projection):
"""Connect-up a Projection."""
presynaptic_cells = projection.pre.all_cells.astype('int64')
postsynaptic_cells = projection.post.all_cells.astype('int64')
if csa.arity(self.cset) == 2:
param_map = {'weight': 0, 'delay': 1}
nest.CGConnect(presynaptic_cells, postsynaptic_cells, self.cset,
param_map, projection.nest_synapse_model)
else:
nest.CGConnect(presynaptic_cells, postsynaptic_cells, self.cset,
model=projection.nest_synapse_model)
projection._connections = None # reset the caching of the connection list, since this will have to be recalculated
projection._sources.extend(presynaptic_cells)