def testBarcode2reverse(self):
sequence = "RDESQSHKFKGTIR---XSNRDCESQSHKFKGTCIR---XSNCASVCXS-E-GF--NGGHCRG--RRCYCTAK-"
positions = [10, 5]
barcodes = BUILT_IN_BARCODES[:2]
bcseq, residues = cysbar.barcodeSequence(sequence, positions, barcodes)
self.assertEqual(bcseq, "")
self.assertEqual(residues, [])
def testBarcode2(self):
sequence = "RDESQSHKFKGTIR---XSNRDCESQSHKFKGTCIR---XSNCASVCXS-E-GF--NGGHCRG--RRCYCTAK-"
positions = [5, 10]
barcodes = BUILT_IN_BARCODES[:2]
bcseq, residues = cysbar.barcodeSequence(sequence, positions, barcodes)
self.assertEqual(bcseq, "RDESwwyhwyyhmmSHKFwhwmmhyhyyGTIR---XSNRDCESQSHKFKGTCIR---XSNCASVCXS-E-GF--NGGHCRG--RRCYCTAK-")
self.assertEqual(residues, ['Q','K'])
